Browse publications by year: 2012

  1. Thanapackiam P, Salleh KO, Ghaffar FA
    J Environ Biol, 2012 Apr;33(2 Suppl):373-9.
    PMID: 23424840
    This paper discusses the outcome of a research that examines the relationships between vulnerability and adaptation of urban dwellers to the slope failure threat in the Klang Valley Region. Intense urban landuse expansions in the Klang Valley Region have increased urban dwellers vulnerability to slope failures in recent years. The Klang Valley Region was chosen as the study area due to the increasing intensities and frequencies of slope failures threat. This paper examines urban dwellers vulnerability based on their (1) population and demographics characteristics, (2) the state of physical structures of dwellings and (3) the situation of the immediate environment threatened by slope failures. The locations of slope failure incidents were identified, mapped and examined followed with a detailed field study to identified areas. The results identified significant relationships between vulnerability indicators and slope failures in the Klang Valley Region. The findings of the study are envisaged to give valuable insights on addressing the threat of slope failures in the Klang Valley Region.
    MeSH terms: Housing; Humans; Turkey; Urban Population*; Ecosystem; Landslides*
  2. Yunus ZM, Kamaludin DA, Mamat M, Choy YS, Ngu L
    JIMD Rep, 2012;5:99-107.
    PMID: 23430924 DOI: 10.1007/8904_2011_105
    INTRODUCTION: Maple Syrup Urine Disease (MSUD) is an autosomal recessive disorder caused by defects in the branched-chain α-ketoacid dehydrogenase complex resulting in accumulation of branched-chain amino acids (BCAAs) and corresponding branched-chain ketoacids (BCKAs) in tissues and plasma, which are neurotoxic. Early diagnosis and subsequent nutritional modification management can reduce the morbidity and mortality. Prior to 1990s, the diagnosis of MSUD and other inborn errors of metabolism (IEM) in Malaysia were merely based on clinical suspicion and qualitative one-dimensional thin layer chromatography technique. We have successfully established specific laboratory diagnostic techniques to diagnose MSUD and other IEM. We described here our experience in performing high-risk screening for IEM in Malaysia from 1999 to 2006. We analysed the clinical and biochemical profiles of 25 patients with MSUD.

    METHODS: A total of 12,728 plasma and urine samples from patients suspected of having IEM were received from physicians all over Malaysia. Plasma amino acids quantitation using fully automated amino acid analyzer and identification of urinary organic acids using Gas Chromatography Mass Spectrometry (GCMS). Patients' clinical information were obtained from the request forms and case records Results: Twenty-five patients were diagnosed MSUD. Nineteen patients (76%) were affected by classical MSUD, whereas six patients had non-classical MSUD. Delayed diagnosis was common among our case series, and 80% of patients had survived with treatment with mild-to-moderate learning difficulties.

    CONCLUSION: Our findings suggested that MSUD is not uncommon in Malaysia especially among the Malay and early laboratory diagnosis is crucial.

  3. Balasubramaniam S, Choy YS, Talib A, Norsiah MD, van den Heuvel LP, Rodenburg RJ
    JIMD Rep, 2012;5:113-22.
    PMID: 23430926 DOI: 10.1007/8904_2011_107
    Mitochondrial disorders are a heterogeneous group of often multisystemic and early fatal diseases caused by defects in the oxidative phosphorylation (OXPHOS) system. Given the complexity and intricacy of the OXPHOS system, it is not surprising that the underlying molecular defect remains unidentified in many patients with a mitochondrial disorder. Here, we report the clinical features and diagnostic workup leading to the elucidation of the genetic basis for a combined complex I and IV OXPHOS deficiency secondary to a mitochondrial translational defect in an infant who presented with rapidly progressive liver failure, encephalomyopathy, and severe refractory lactic acidemia. Sequencing of the GFM1 gene revealed two inherited novel, heterozygous mutations: a.539delG (p.Gly180AlafsX11) in exon 4 which resulted in a frameshift mutation, and a second c.688G > A (p.Gly230Ser) mutation in exon 5. This missense mutation is likely to be pathogenic since it affects an amino acid residue that is highly conserved across species and is absent from the dbSNP and 1,000 genomes databases. Review of literature and comparison were made with previously reported cases of this recently identified mitochondrial disorder encoded by a nuclear gene. Although limited in number, nuclear gene defects causing mitochondrial translation abnormalities represent a new, rapidly expanding field of mitochondrial medicine and should potentially be considered in the diagnostic investigation of infants with progressive hepatoencephalomyopathy and combined OXPHOS disorders.
    MeSH terms: Amino Acids; Exons; Humans; Infant; Mitochondria; Mutation; Oxidative Phosphorylation; Frameshift Mutation; Liver Failure; Mutation, Missense; Mitochondrial Diseases
  4. Ramli SR, Leong MC, Khaithir TM, Aziz MN, Loons LC, Rafia MH
    PMID: 23431829
    We report a case of Cryptococcus humicolus meningitis complicated by communicating hydrocephalus in an apparently immunocompetent 49-year-old psychiatric patient from a nursing home. He presented with a history of poor oral intake, weight loss, headache, vomiting, blurred vision, frequent falls and unsteady gait for the previous three months. He had a history of chronic cough, productive of whitish sputum for the previous month but no hemoptysis. Cerebrospinal fluid culture was positive for Cryptococcus humicolus. He was treated with intravenous amphotericin B and oral fluconazole and had clinical and microbiological improvement after three weeks of treatment. Unfortunately, the patient acquired nosocomial methicillin-resistant Staphylococcus aureus infection and died due to overwhelming sepsis.
    MeSH terms: Amphotericin B/therapeutic use; Antifungal Agents/therapeutic use; Cryptococcus*; Humans; Hydrocephalus/etiology*; Hydrocephalus/microbiology*; Immunocompetence; Malaysia; Male; Middle Aged; Fluconazole/therapeutic use; Meningitis, Fungal/complications*; Meningitis, Fungal/drug therapy; Meningitis, Fungal/microbiology*
  5. Muthupalaniappen L, Omar J, Omar K, Iryani T, Hamid SN
    PMID: 23431837
    We carried out a cross sectional study to detect emotional and behavioral problems among adolescents who smoke and their help-seeking behavior. This study was conducted in Sarawak, East Malaysia, between July and September 2006. Emotional and behavioral problems were measured using the Youth Self-Report (YSR/11-18) questionnaire; help seeking behavior was assessed using a help-seeking questionnaire. Three hundred ninety-nine students participated in the study; the smoking prevalence was 32.8%. The mean scores for emotional and behavioral problems were higher among smokers than non-smokers in all domains (internalizing, p = 0.028; externalizing, p = 0.001; other behavior, p = 0.001). The majority of students who smoked (94.7%) did not seek help from a primary health care provider for their emotional or behavioral problems. Common barriers to help-seeking were: the perception their problems were trivial (60.3%) and the preference to solve problems on their own (45.8%). Our findings suggest adolescent smokers in Sarawak, East Malaysia were more likely to break rules, exhibit aggressive behavior and have somatic complaints than non-smoking adolescents. Adolescent smokers preferred to seek help for their problems from informal sources. Physicians treating adolescents should inquire about smoking habits, emotional and behavioral problems and offer counseling if required.
    MeSH terms: Adolescent; Aggression; Mental Disorders/epidemiology*; Mental Disorders/psychology*; Cross-Sectional Studies; Emotions*; Female; Humans; Malaysia/epidemiology; Male; Patient Acceptance of Health Care/psychology*; Primary Health Care/organization & administration; Smoking/epidemiology*; Smoking/psychology
  6. Ali R, Shaharudin R, Omar A, Yusoff F
    Int J Occup Environ Health, 2012 Oct-Dec;18(4):299-306.
    PMID: 23433290 DOI: 10.1179/1077352512Z.00000000031
    INTRODUCTION: This study on workplace injuries and risk reduction practices was part of the Malaysia National Health Morbidity Survey III (NHMS III) conducted in 2006.
    METHODS: This cross-sectional population-based survey was conducted to determine the incidence of workplaces injuries and assess the magnitude of some important risk reduction practices among workers. Data were gathered through face-to-face household interviews using a pre-coded questionnaire.
    RESULTS: Of the 22 880 eligible respondents, 88·2% (20 180) responded. The incidence rate for injuries at the workplace was 4·9 per 100 (95% CI: 4·6-5·2). The overall proportion of workers who had received occupational safety and health (OSH) training before or within 1 month of starting work was 33·6%. Among respondents who perceived that personal protective equipment (PPE) was required at their workplace, only 38·9% (95% CI: 37·8-39·4) were provided with it by their employers.
    DISCUSSION: Further studies are urgently needed to identify reasons for and management of the low uptake of risk reduction practices. This issue needs to be addressed to ensure the safety and health of our working population.
    Study name: National Health and Morbidity Survey (NHMS-2006)
    MeSH terms: Accidents, Occupational/prevention & control*; Accidents, Occupational/statistics & numerical data*; Adolescent; Adult; Aged; Cross-Sectional Studies; Documentation; Female; Humans; Inservice Training/organization & administration; Malaysia/epidemiology; Male; Middle Aged; Protective Devices/utilization; Socioeconomic Factors; Incidence; Occupational Health; Safety Management/methods; Safety Management/organization & administration*; Young Adult; Occupational Injuries/epidemiology*; Occupational Injuries/prevention & control*
  7. Kasim S, Moran D, McFadden E
    Heart Views, 2012 Oct;13(4):139-45.
    PMID: 23439781 DOI: 10.4103/1995-705X.105731
    Critical coronary stenoses accounts for a small proportion of acute coronary syndromes and sudden death. The majority are caused by coronary thromboses that arise from a nonangiographically obstructive atheroma. Recent developments in noninvasive imaging of so-called vulnerable plaques created opportunities to direct treatment to prevent morbidity and mortality associated with these high-risk lesions. This review covers therapy employed in the past, present, and potentially in the future as the natural history of plaque assessment unfolds.
  8. Poh R, Tan JA, Deva JP, Poo D, Yong Y, Arjunan S
    West Indian Med J, 2012 Sep;61(6):569-73.
    PMID: 23441349
    To determine the activity of paraoxonase 1 (PON1) in keratoconus in a Malaysian population in comparison with non-keratoconic subjects.
    MeSH terms: Adolescent; Adult; Female; Genotype; Humans; Keratoconus/enzymology*; Keratoconus/ethnology; Keratoconus/genetics; Male; Middle Aged; Polymorphism, Genetic; Case-Control Studies; Aryldialkylphosphatase/blood*; Aryldialkylphosphatase/genetics; European Continental Ancestry Group; Asian Continental Ancestry Group; Young Adult
  9. Munawer NH, Md Zin R, Md Ali SA, Muhammad R, Ali J, Das S
    Biomed J, 2012 Nov-Dec;35(6):486-92.
    PMID: 23442362 DOI: 10.4103/2319-4170.104414
    Fibroadenomas (FA) are common while phyllodes tumors (PT) are rare and both tumors are composed of epithelial and stromal components. We evaluated the expression status of ER, Bc12, p53, and MIB-1 protein in these tumors.
    MeSH terms: Adolescent; Adult; Aged; Breast Neoplasms/metabolism; Breast Neoplasms/pathology; Child; Phyllodes Tumor/metabolism*; Phyllodes Tumor/pathology; Female; Humans; Middle Aged; Neoplasm Recurrence, Local/metabolism; Neoplasm Recurrence, Local/pathology; Nuclear Proteins/metabolism*; Genes, p53/physiology*; Stromal Cells/metabolism; Stromal Cells/pathology; Fibroadenoma/metabolism*; Fibroadenoma/pathology; Ubiquitin-Protein Ligases/metabolism*; Young Adult
  10. De Silva WD, Sinha DN, Kahandawaliyanag A
    Indian J Cancer, 2012 Oct-Dec;49(4):438-42.
    PMID: 23442410 DOI: 10.4103/0019-509X.107753
    Sri Lanka became a signatory to the WHO Frame Work Convention on Tobacco Control in September 2003, and this was ratified in November 2003. With a view to reduce the use of tobacco in Sri Lanka, the National Authority on Tobacco and Alcohol Act (NATA) No. 27 of 2006 was implemented.
    MeSH terms: Adolescent; Adult; Assertiveness*; Female; Humans; Male; Motivation*; Quality Assurance, Health Care; Surveys and Questionnaires; Smoking/prevention & control*; Smoking/psychology*; Sri Lanka; Case-Control Studies; Smoking Cessation/psychology*; Tobacco Industry; Government Regulation; Young Adult
  11. Ngah CW, Yahya MA
    Food Chem, 2012 Oct 15;134(4):2406-10.
    PMID: 23442702 DOI: 10.1016/j.foodchem.2012.04.032
    The microwave digestion method was developed and verified for the determination of arsenic in shrimp paste samples. Experimental design for five factors (HNO(3) and H(2)O(2) volumes, sample weight, microwave power and digestion time) were used for the optimisation of sample digestion. For this purpose, two level half factorial design, which involves 16 experiments, was adopted. The concentration of arsenic was analysed by graphite furnace atomic absorption spectrometry. Design Expert® 7.0 software was used to interpret all data obtained. The combination of 2 mL HNO(3) and 1 mL H(2)O(2) volumes, 0.1g sample weight, 1400 W power and 5 min digestion time was found to be the optimum parameters required to digest the shrimp paste samples. Tests with spiked samples presented good recoveries with relative standard deviations between 0.32% and 5.35%.
    MeSH terms: Animals; Arsenic/isolation & purification*; Crustacea/chemistry*; Digestion; Food Contamination/analysis; Spectrophotometry, Atomic; Seafood/analysis*; Analytic Sample Preparation Methods/methods*
  12. Tan TC, AlKarkhi AF, Easa AM
    Food Chem, 2012 Oct 15;134(4):2430-6.
    PMID: 23442706 DOI: 10.1016/j.foodchem.2012.04.049
    The addition of ribose to bovine or porcine gelatine solutions followed by heating at 95 °C yielded brown solutions with different pH, colour (CIE L(*) and b(*)) and absorbance (A(420*) values. These differences were used for gelatine powder identification, differentiation and quality control. Differentiation analysis of the Maillard reaction parameters was conducted using cluster analysis (CA) and confidence intervals (CI). The potential use of the method as a quality control procedure was evaluated by using statistical process control (SPC). CA revealed that the two types of gelatine could be classified into two different groups. CI (95% confidence) revealed that the absorbance and colour values could be used as indicators for differentiation between the two types of gelatine because the intervals between the Maillard reaction parameters of the samples were far apart. The methodology demonstrated good reproducibility because it behaved predictably based on the X¯-S charts generated from the SPC charts.
    MeSH terms: Animals; Cattle; Chemistry Techniques, Analytical/methods*; Gelatin/chemistry*; Powders/chemistry; Quality Control; Ribose/chemistry*; Skin/chemistry; Swine; Maillard Reaction
  13. Muhamad H, Zainudin BH, Abu Bakar NK
    Food Chem, 2012 Oct 15;134(4):2489-96.
    PMID: 23442715 DOI: 10.1016/j.foodchem.2012.04.095
    Solid phase extraction (SPE) and dispersive solid-phase extraction (d-SPE) were compared and evaluated for the determination of λ-cyhalothrin and cypermethrin in palm oil matrices by gas chromatography with an electron capture detector (GC-ECD). Several SPE sorbents such as graphitised carbon black (GCB), primary secondary amine (PSA), C(18), silica, and florisil were tested in order to minimise fat residues. The results show that mixed sorbents using GCB and PSA obtained cleaner extracts than a single GCB and PSA sorbents. The average recoveries obtained for each pesticide ranged between 81% and 114% at five fortification levels with the relative standard deviation of less than 7% in all cases. The limits of detection for these pesticides were ranged between 0.025 and 0.05 μg/g. The proposed method was applied successfully for the residue determination of both λ-cyhalothrin and cypermethrin in crude palm oil samples obtained from local mills throughout Malaysia.
    MeSH terms: Chromatography, Gas/instrumentation; Chromatography, Gas/methods; Malaysia; Nitriles/analysis*; Nitriles/isolation & purification*; Pesticide Residues/analysis*; Pesticide Residues/isolation & purification*; Plant Oils/chemistry*; Pyrethrins/analysis*; Pyrethrins/isolation & purification*; Solid Phase Extraction/methods*
  14. Anisi MH, Abdullah AH, Razak SA, Ngadi MA
    Sensors (Basel), 2012 03 27;12(4):3964-96.
    PMID: 23443040 DOI: 10.3390/s120403964
    Recent years have witnessed a growing interest in deploying large populations of microsensors that collaborate in a distributed manner to gather and process sensory data and deliver them to a sink node through wireless communications systems. Currently, there is a lot of interest in data routing for Wireless Sensor Networks (WSNs) due to their unique challenges compared to conventional routing in wired networks. In WSNs, each data routing approach follows a specific goal (goals) according to the application. Although the general goal of every data routing approach in WSNs is to extend the network lifetime and every approach should be aware of the energy level of the nodes, data routing approaches may focus on one (or some) specific goal(s) depending on the application. Thus, existing approaches can be categorized according to their routing goals. In this paper, the main goals of data routing approaches in sensor networks are described. Then, the best known and most recent data routing approaches in WSNs are classified and studied according to their specific goals.
    MeSH terms: Automatic Data Processing/methods*; Computer Communication Networks*; Research; Statistics as Topic/methods*; Wireless Technology*
  15. Ahmad MB, Fatehi A, Zakaria A, Mahmud S, Mohammadi SA
    Int J Mol Sci, 2012;13(12):15640-52.
    PMID: 23443085 DOI: 10.3390/ijms131215640
    This study focuses on the fabrication and electrical characterization of a polymer composite based on nano-sized varistor powder. The polymer composite was fabricated by the melt-blending method. The developed nano-composite was characterized by X-ray diffraction (XRD), transmission electron microscopy (TEM), field emission scanning electron microscopy (FeSEM), and energy-dispersive X-ray spectroscopy (EDAX). The XRD pattern revealed the crystallinity of the composite. The XRD study also showed the presence of secondary phases due to the substitution of zinc by other cations, such as bismuth and manganese. The TEM picture of the sample revealed the distribution of the spherical, nano-sized, filler particles throughout the matrix, which were in the 10-50 nm range with an average of approximately 11 nm. The presence of a bismuth-rich phase and a ZnO matrix phase in the ZnO-based varistor powder was confirmed by FeSEM images and EDX spectra. From the current-voltage curves, the non-linear coefficient of the varistor polymer composite with 70 wt% of nano filler was 3.57, and its electrical resistivity after the onset point was 861 KΩ. The non-linear coefficient was 1.11 in the sample with 100 wt% polymer content. Thus, it was concluded that the composites established a better electrical non-linearity at higher filler amounts due to the nano-metric structure and closer particle linkages.
    MeSH terms: Metals/chemistry*; Zinc Oxide/chemistry*; Electric Impedance; Nanocomposites/chemistry*
  16. Sudi IY, Wong EL, Joyce-Tan KH, Shamsir MS, Jamaluddin H, Huyop F
    Int J Mol Sci, 2012;13(12):15724-54.
    PMID: 23443090 DOI: 10.3390/ijms131215724
    Currently, there is no three-dimensional structure of D-specific dehalogenase (DehD) in the protein database. We modeled DehD using ab initio technique, performed molecular dynamics (MD) simulation and docking of D-2-chloropropionate (D-2CP), D-2-bromopropionate (D-2BP), monochloroacetate (MCA), monobromoacetate (MBA), 2,2-dichloropropionate (2,2-DCP), d,l-2,3-dichloropropionate (d,l-2,3-DCP), and 3-chloropropionate (3-CP) into the DehD active site. The sequences of DehD and D-2-haloacid dehalogenase (HadD) from Pseudomonas putida AJ1 have 15% sequence similarity. The model had 80% of the amino acid residues in the most favored region when compared to the crystal structure of DehI from Pseudomonas putida PP3. Docking analysis revealed that Arg107, Arg134 and Tyr135 interacted with D-2CP, and Glu20 activated the water molecule for hydrolytic dehalogenation. Single residue substitutions at 25-30 °C showed that polar residues of DehD were stable when substituted with nonpolar residues and showed a decrease in activity within the same temperature range. The molecular dynamics simulation of DehD and its variants showed that in R134A variant, Arg107 interacted with D-2CP, while in Y135A, Gln221 and Arg231 interacted with D-2CP. It is our emphatic belief that the new model will be useful for the rational design of DehDs with enhanced potentials.
    MeSH terms: Bacterial Proteins/chemistry*; Hydrolases/chemistry*; Rhizobium/enzymology*; Pseudomonas putida/enzymology; Catalytic Domain; Structural Homology, Protein; Molecular Dynamics Simulation*
  17. Qazi HH, bin Mohammad AB, Akram M
    Sensors (Basel), 2012 Nov 29;12(12):16522-56.
    PMID: 23443392 DOI: 10.3390/s121216522
    Optical chemical sensors have promoted escalating interest in the determination of various pollutants in the environment, which are creating toxicity and may cause serious health problems. This review paper focuses particularly on the recent progress and developments in this field; the working principles and basic classes of optical chemical sensors have been briefly described.
    MeSH terms: Fiber Optic Technology; Humans; Biosensing Techniques*; Optics and Photonics
  18. Aznal SS, Meng FG, Nalliah S, Tay A, Chinniah K, Jamli MF
    Indian J Pathol Microbiol, 2012 Oct-Dec;55(4):450-5.
    PMID: 23455778 DOI: 10.4103/0377-4929.107778
    Pelvic organ prolapse (POP) is associated with menopause and changes in the proteins of the pelvic supporting system, but there is scant data on the precise alterations in Malaysian women.
    MeSH terms: Aged; Female; Genitalia, Female/physiology*; Humans; Immunohistochemistry; Ligaments/pathology*; Ligaments/chemistry; Malaysia; Microscopy; Middle Aged; Extracellular Matrix Proteins/analysis*; Premenopause; Postmenopause; Pelvic Organ Prolapse/pathology*
  19. Ng SW
    Acta Crystallogr Sect E Struct Rep Online, 2012 Dec 1;68(Pt 12):m1536.
    PMID: 23468744 DOI: 10.1107/S1600536812045060
    In the title solvated salt, [Ag(C18H15P)4](CF3CO2)·C2H5OH, the Ag(I) atom is coordinated by four P atoms from triphenyl-phosphane ligands in a distorted tetra-hedral geometry. The anion and solvent are engaged in weak O-H⋯O hydrogen bonds. Of the four triphenyl-phosphane ligands, two each have an equally disordered phenyl ring while the Ag(I) atom is disordered over two positions in a 0.9595 (15):0.0405 (15) ratio and the trifluoro-acetate anion is equally disordered over two positions with respect to the lattice ethanol mol-ecule.
  20. Ng SW
    Acta Crystallogr Sect E Struct Rep Online, 2012 Dec 1;68(Pt 12):m1537.
    PMID: 23468745 DOI: 10.1107/S1600536812045072
    The Ag(I) atom in the title hydrated solvated salt, [Ag(C18H15As)4](CF3CO2)·0.5CH3OH·0.5H2O, is coordinated by four As atoms from triphenyl-arsane ligands in a distorted tetra-hedral geometry. In the crystal, O-H⋯O hydrogen bonding occurs between carboxyl-ate groups of anions and lattice solvent mol-ecules. Of the four triphenyl-arsane ligands in the Ag complex cation, two each have an equally disordered phenyl ring while the trifluoro-acetate anion is disordered over two positions with respect to the lattice methanol and water mol-ecules which both show half-occupyncy. The crystal studied was a non-merohedral twin with a 13.6 (1)% contribution of the minor twin component.
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