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Fulltext Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing

Wong MM, Cannon CH, Wickneswari R

BMC Genomics, 2011;12:342.
PMID: 21729267 DOI: 10.1186/1471-2164-12-342

Acacia auriculiformis × Acacia mangium hybrids are commercially important trees for the timber and pulp industry in Southeast Asia. Increasing pulp yield while reducing pulping costs are major objectives of tree breeding programs. The general monolignol biosynthesis and secondary cell wall formation pathways are well-characterized but genes in these pathways are poorly characterized in Acacia hybrids. RNA-seq on short-read platforms is a rapid approach for obtaining comprehensive transcriptomic data and to discover informative sequence variants.

Matched MeSH terms: Acacia/cytology*; Acacia/genetics; Acacia/metabolism*
Fulltext Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome data

Wong MM, Cannon CH, Wickneswari R

BMC Genomics, 2012;13:726.
PMID: 23265623 DOI: 10.1186/1471-2164-13-726

Next Generation Sequencing has provided comprehensive, affordable and high-throughput DNA sequences for Single Nucleotide Polymorphism (SNP) discovery in Acacia auriculiformis and Acacia mangium. Like other non-model species, SNP detection and genotyping in Acacia are challenging due to lack of genome sequences. The main objective of this study is to develop the first high-throughput SNP genotyping assay for linkage map construction of A. auriculiformis x A. mangium hybrids.

Matched MeSH terms: Acacia/genetics*
Importance of carpenter bee, xylocopa varipuncta (hymenoptera: apidae) as pollination agent for mangrove community of Setiu Wetlands, Terengganu, Malaysia

Wahizatul Afzan Azmi, Roziah Ghazi, Nor Zalipah Mohamed

Sains Malaysiana, 2012;41:1057-1062.

A study on the importance of Xylocopa varipuncta (Hymenoptera: Apidae) as pollination agent was conducted at the Setiu Mangrove Forest, Terengganu from September to December 2010. The objective of this study was to identify the pollens collected by carpenter bees (X. varipuncta) in the mangrove community of Setiu Wetlands. A total of 35 types of pollens were collected from the body of X. varipuncta and only 10 types of the pollens were successfully identified. The identified pollens were of Avicennia alba, Lumnitzera racemosa, Sonneratia caseolaris, S. ovata and Rhizophora apiculata from exclusive mangroves, while Suregada multiflora, Melaleuca cajuputi, Derris trifoliata, Acacia auriculiformis and Hibiscus tiliaceus were from non-exclusive mangroves. Melaleuca cajuputi was the highest number of pollen carried by X. varipuncta. This study showed that X. varipuncta is an important pollen carrier in the mangrove community of Setiu Wetlands, Terengganu.

Matched MeSH terms: Acacia
Fulltext Suitable coating material for microencapsulation of spray-dried fish oil

Tirgar M, Jinap S, Zaidul IS, Mirhosseini H

J Food Sci Technol, 2015 Jul;52(7):4441-9.
PMID: 26139910 DOI: 10.1007/s13197-014-1515-3

This study was conducted to screen the most suitable coating material for the production of microencapsulated fish oil powder using ternary blends of maltodextrin (15, 25 % w/w), Arabic gum (2.5, 7.5 % w/w), and methylcellulose (0.5, 1.5 % w/w). The physical properties of fish oil emulsion and encapsulated powders were evaluated. Arabic gum (5 % w/w) showed the most significant (p

Matched MeSH terms: Acacia
Evaluation of the sub-acute toxicity of Acacia catechu Willd seed extract in a Wistar albino rat model

Thangavelu L, Balusamy SR, Shanmugam R, Sivanesan S, Devaraj E, Rajagopalan V, et al.

Regul Toxicol Pharmacol, 2020 Jun;113:104640.
PMID: 32169672 DOI: 10.1016/j.yrtph.2020.104640

Acacia catechu (A. catechu) or Khair (Hindi) is used in several herbal preparations in the Ayurvedic system of medicine in India. Traditionally, this drug is beneficial against several gastrointestinal and stomach related ailments, and leprosy. The present investigation was carried out to evaluate the sub-acute oral toxicity of the ethanolic extract of A. catechu seeds in Wistar albino rats. Results obtained from the quantitative chemical analysis of A. catechu seed extract were compared with commercially available standards. A. catechu seed extract was administered orally at the doses of 250, 500 and 1000 mg/kg b.w. daily for 28 days. General behavior, bodyweight and mortality were examined during the entire study period. At the end of 28 days, hematological and biochemical parameters along with the relative organ weights were determined. It was observed that the extract did not induce death or any significant changes in the body weight, relative weight of vital organs and in hematological parameters for up to a dose of 1000 mg/kg. The oral administration of the plant extract did not produce any significant changes in the levels of glucose. In addition, there were no significant changes in the activity of both hepatotoxic and nephrotoxic marker enzymes in the serum. Oral administration of A. catechu also did not produce any significant changes in the levels of oxidative markers. Furthermore, the findings from the biochemical studies were, well corroborated with the histological findings.

Matched MeSH terms: Acacia/chemistry*
Acacia catechu seed extract provokes cytotoxicity via apoptosis by intrinsic pathway in HepG2 cells

Thangavelu L, Geetha RV, Devaraj E, Dua K, Chellappan DK, Balusamy SR

Environ Toxicol, 2022 Mar;37(3):446-456.
PMID: 34800081 DOI: 10.1002/tox.23411

Acacia catechu Willd (Fabaceae) is a thorny tree widely distributed in India and commonly used as traditional Ayurvedic medicine for various ailments. The current study evaluates the cytotoxic potentials of A. catechu ethanolic seed extract (ACSE) in HepG2 cells, a human hepatocellular carcinoma cell line. The HepG2 cells were treated with 0.1, 0.3, 1, 3, 10, 30, 100, 300 and 1000 μg/ml of ACSE and the cytotoxic effect was evaluated by MTT and lactate dehydrogenase (LDH) leakage assays. The IC50 of ACSE was found at 77.04 μg/ml and therefore, further studies were carried out with the concentrations of 35 and 70 μg/ml. The intracellular reactive oxygen species (ROS) generation and apoptosis-related morphological changes were evaluated. Gene expressions of Bax, Bcl-2, cytochrome C (Cyt-c), caspases-9 and 3 were analyzed by qPCR. The ACSE treatments caused LDH leakage was associated with an increased ROS generation. The increased ROS generation was associated with the downregulation of intracellular antioxidant enzyme superoxide dismutase and reduced glutathione content. AO/EB and PI staining also confirmed chromatin condensation and apoptosis. The flow cytometric analysis showed an accumulation of HepG2 cells at sub G0/G1 (apoptotic) phase upon ACSE treatments. The ACSE induced cytotoxicity and oxidative stress were related to increased apoptotic marker gene expressions such as Bax, Cyt-c, caspase-9 and 3, and decreased anti-apoptotic marker Bcl-2. The current finding suggests that ACSE has apoptosis-inducing potential via the mitochondrial pathway in HepG2 cells.

Matched MeSH terms: Acacia*
A new Australian species of invasive psyllid, Acizzia convector Burckhardt & Taylor, sp. nov. (Psylloidea: Psyllidae) associated with Acacia auriculiformis and A. mangium (Fabaceae)

Taylor GS, Halbert SE, Tripathy A, Burckhardt D

Zootaxa, 2023 Jan 11;5228(1):61-72.
PMID: 37044665 DOI: 10.11646/zootaxa.5228.1.3

Acizzia convector Burckhardt & Taylor, sp. nov., a psyllid originating from Australia, is described from material from Australia (NT), South and Southeast Asia (Brunei, Cambodia, India, Laos, Malaysia [Sabah], Singapore and Thailand) and North America (USA [Florida from six counties]). The new species is diagnosed and illustrated, and a key is provided to identify the adults of Acizzia species adventive in the New World. The new species develops on Acacia auriculiformis and A. mangium (Fabaceae), two mimosoids planted and widely naturalised throughout the tropics. While the presence of A. convector sp. nov. in Florida is probably recent (earliest record from October 2014), it occurs in Southeast Asia at least since the 1980s. The wide distribution of the host plants in tropical Africa and South America would allow the psyllids also to occur there.

Matched MeSH terms: Acacia*
Fulltext Nano-structural study of microfibrils in Acacia Mangium wood using small- angle x-ray scattering (SAXS)

Tabet, Tamer A., Fauziah Abdul Aziz, Shahidan Radiman

Journal of Nuclear and Related Technologies, 2007;2007(1):209-216.
MyJurnal

Small-angle X-ray scattering (SAXS) was used to investigate the nanostructure of the microfibrils of cell wall in Acacia Mangium wood. Parameters, such as the fibre length (L), surface area of the single fibre (S), the correspondence distance from the center of the fibre to the center of its neighbor and the shape of the fibre were determined as a function to the distance from pith towards the bark. The results indicate that the fibre length ranged from 53.44 nm to 13.72 nm from pith to bark. Surface area of the single fibre varied from 0.65 nm 2 to 4.36 nm 2 , the highest being found at the end of bark region. The mean value of the correspondence distance is 13.95 nm. Surface structure analysis from scattering graph showed a rod shape of fibre in the pith region of Acacia Mangium wood. The use of SAXS technique and scanning electron microscope (SEM) micrographs gives the most reliable dimensions values.

Matched MeSH terms: Acacia
Fulltext Influence of microfibril angle on the thermal and dynamic-mechanical properties of Acacia mangium wood using x-ray diffraction and dynamicsmechanical test

Tabet, Tamer A., Wajir, Julynnie, Fauziah Abdul Aziz

Journal of Nuclear and Related Technologies, 2009;2009(1):0-0.
MyJurnal

The term microfibril angle, MFA in wood science refers to the angle between the direction of the helical windings of cellulose microfibrils in the secondary cell wall, S2 layer of fibres and tracheids and the long axis of the cell. In this study, the mean MFA of the cell walls were determined for thin samples of thickness 200.0 µm from pith and outwards, for eight ages of Acacia mangium wood. The determination of MFA was based on a diffraction pattern arising from cellulose crystal planes of the type 002 generated by x-ray diffraction and recorded using an electronic detector. The results show an inversely relationship between MFA and age of tree in Acacia mangium wood. MFA decreased from 26.13° at age 3 year-old to 0.20° at tree of age 15 year-old for the pith region. The most significant drop occurred from 16.14° at age 7 yearold to 11.30° at age 9 year-old. An inversely relationship between MFA and storage modulus E’ was evidence in Acacia mangium at age 10-year-old. The results showed that about 76.22% variation of loss modulus E” was attributed to the MFA, while about 66.4% of the variation of glass transition Tg was explained by MFA under the same experimental conditions.

Matched MeSH terms: Acacia
Fulltext Effect of acetone extract from stem bark of Acacia species (A. dealbata, A. ferruginea and A. leucophloea) on antioxidant enzymes status in hydrogen peroxide-induced HepG2 cells

Sowndhararajan K, Hong S, Jhoo JW, Kim S, Chin NL

Saudi J Biol Sci, 2015 Nov;22(6):685-91.
PMID: 26586994 DOI: 10.1016/j.sjbs.2015.03.010

Acacia species are multipurpose trees, widely used in the traditional systems of medicine to treat various ailments. The major objective of the present study was to determine the gene expression of enzymatic antioxidants by acetone extract from the stem bark of three Acacia species (Acacia dealbata, Acacia ferruginea and Acacia leucophloea) in hydrogen peroxide (H2O2)-induced human hepatoma (HepG2) cells. The expression of antioxidant enzymes such as superoxide dismutase containing copper-zinc (CuZnSOD)/manganese (MnSOD), catalase (CAT) and glutathione peroxidase (GPx) in HepG2 cells was evaluated by real-time PCR. The results of antioxidant enzyme expression in real-time PCR study revealed that the H2O2 (200 μM) challenged HepG2 cells reduced the expression of enzymes such as SOD, GPx and CAT. However, the cells pre-treated with acetone extracts of all the three Acacia species significantly (P > 0.05) up-regulated the expression of antioxidant enzymes in a concentration dependent manner (25, 50 and 75 μg/mL). In conclusion, the findings of our study demonstrated that the acetone extract of Acacia species effectively inhibited H2O2 mediated oxidative stress and may be useful as a therapeutic agent in preventing oxidative stress mediated diseases.

Matched MeSH terms: Acacia
Fulltext Suppression of Xanthomonas oryzae pv. oryzae biofilm formation by Acacia mangium methanol leaf extract

Shafiei SNS, Ahmad K, Ikhsan NFM, Ismail SI, Sijam K

Braz J Biol, 2020 2 20;81(1):11-17.
PMID: 32074168 DOI: 10.1590/1519-6984.206124

Xanthomonas oryzae pv. oryzae (Xoo), a pathogen responsible for rice bacterial leaf blight, produces biofilm to protect viable Xoo cells from antimicrobial agents. A study was conducted to determine the potency of Acacia mangium methanol (AMMH) leaf extract as a Xoo biofilm inhibitor. Four concentrations (3.13, 6.25, 9.38, and 12.5 mg/mL) of AMMH leaf extract were tested for their ability to inhibit Xoo biofilm formation on a 96-well microtiter plate. The results showed that the negative controls had the highest O.D. values from other treatments, indicating the intense formation of biofilm. This was followed by the positive control (Streptomycin sulfate, 0.2 mg/mL) and AMMH leaf extract at concentration 3.13 mg/mL, which showed no significant differences in their O.D. values (1.96 and 1.57, respectively). All other treatments at concentrations of 6.25, 9.38, and 12.5 mg/mL showed no significant differences in their O.D. values (0.91, 0.79, and 0.53, respectively). For inhibition percentages, treatment with concentration 12.5 mg/mL gave the highest result (81.25%) followed by treatment at concentrations 6.25 and 9.38 mg/mL that showed no significant differences in their inhibition percentage (67.75% and 72.23%, respectively). Concentration 3.13 mg/mL resulted in 44.49% of biofilm inhibition and the positive control resulted in 30.75% of biofilm inhibition. Confocal laser scanning microscopy (CLSM) analysis of Xoo biofilm inhibition and breakdown showed the presence of non-viable Xoo cells and changes in aggregation size due to increase in AMMH leaf extract concentration. Control slides showed the absence of Xoo dead cells.

Matched MeSH terms: Acacia*
Fulltext Four-Week Consumption of Malaysian Honey Reduces Excess Weight Gain and Improves Obesity-Related Parameters in High Fat Diet Induced Obese Rats

Samat S, Kanyan Enchang F, Nor Hussein F, Wan Ismail WI

Evid Based Complement Alternat Med, 2017;2017:1342150.
PMID: 28246535 DOI: 10.1155/2017/1342150

Many studies revealed the potential of honey consumption in controlling obesity. However, no study has been conducted using Malaysian honey. In this study, we investigated the efficacy of two local Malaysian honey types: Gelam and Acacia honey in reducing excess weight gain and other parameters related to obesity. The quality of both honey types was determined through physicochemical analysis and contents of phenolic and flavonoid. Male Sprague-Dawley rats were induced to become obese using high fat diet (HFD) prior to introduction with/without honey or orlistat for four weeks. Significant reductions in excess weight gain and adiposity index were observed in rats fed with Gelam honey compared to HFD rats. Moreover, levels of plasma glucose, triglycerides, and cholesterol, plasma leptin and resistin, liver enzymes, renal function test, and relative organ weight in Gelam and Acacia honey treated groups were reduced significantly when compared to rats fed with HFD only. Similar results were also displayed in rats treated with orlistat, but with hepatotoxicity effects. In conclusion, consumption of honey can be used to control obesity by regulating lipid metabolism and appears to be more effective than orlistat.

Matched MeSH terms: Acacia
A study of pollen prevalence in relation to pollen allergy in Malaysian asthmatics

Sam CK, Kesavan-Padmaja, Liam CK, Soon SC, Lim AL, Ong EK

Asian Pac J Allergy Immunol, 1998 Mar;16(1):1-4.
PMID: 9681122

In this paper we report results of skin prick tests (SPT) using pollen extracts on 200 patients with clinical symptoms of asthma, and results of a parallel study in which pollen was collected and classified over a period of 18 months. The patients were outpatients from the University Hospital in Kuala Lumpur, Malaysia, while the pollen grains were collected with a spore trap placed in the campus of the University of Malaya, approximately one kilometer from the University Hospital. Pollen extracts of 3 grasses (Bahia, Bermuda, rough pigweed) and 2 flowering trees, Acacia and Melaleuca, were used in the SPT. Of the 29.5% asthmatics with positive SPT reactions, 21.5% were to one or more of the grass pollens, 21.5% to Acacia and 7.5% to Melaleuca pollen. Acacia and Bermuda grass extracts were the most allergenic, which agreed with results of the pollen collection which showed grass and Acacia pollen grains to be the two most commonly found pollens.

Study site: University Malaya Medical Centre (UMMC)

Matched MeSH terms: Acacia/immunology
Fulltext Comparison of fusion of different algorithms in mapping of Melaleuca Forest in Marang district, Malaysia

Saberioon, M.M., Mardan, M., Nordin, L., Mohd Sood, A.

Pertanika Journal of Science & Technology, 2011;19(3):97-105.
MyJurnal

Melaleuca cajuputi and Acacia auriculiformis trees are major sources of nectar and pollen for Apis dorsata and the colonies are a major source of honey to the rural poor, honey hunters. Honey is a supplementary income to many of these people (including school children) in the Marang district, Terengganu. In this study, Marang area with 270 square kilometers was chosen as pilot study area in Terengganu state for mapping M. cajuputi and A. auriculiformis as two dominant species in low land secondary forest in Terengganu state.To inventory and produce land use map of Melaleuca forest in Marang area, in this study SPOT-5 satellite image in multispectral mode with 10 meter resolution which is acquired in 2007 as optical satellite was utilized. Most images from optical satellites have some null data from ground because of clouds and shadow of clouds. To solve this problem, Hue, Saturation and value (HSV) and Principal Component Analysis (PCA) were used as fusion techniques to replace null data with microwave data which taken from Radarsat-1 image in C-band with 25 meter resolution image. Accordingly, fusion technique which was used in this research not only was a technique to improve information but also caused the accuracy increasing than land use map by just only SPOT-5 image. Also between two different fusion techniques, PCA shows the better result than HSV as two different fusion techniques.

Matched MeSH terms: Acacia
Fulltext Acacia Holosericea: An Invasive Species for Bio-char, Bio-oil, and Biogas Production

Reza MS, Ahmed A, Caesarendra W, Abu Bakar MS, Shams S, Saidur R, et al.

Bioengineering (Basel), 2019 Apr 16;6(2).
PMID: 30995765 DOI: 10.3390/bioengineering6020033

To evaluate the possibilities for biofuel and bioenergy production Acacia Holosericea, which is an invasive plant available in Brunei Darussalam, was investigated. Proximate analysis of Acacia Holosericea shows that the moisture content, volatile matters, fixed carbon, and ash contents were 9.56%, 65.12%, 21.21%, and 3.91%, respectively. Ultimate analysis shows carbon, hydrogen, and nitrogen as 44.03%, 5.67%, and 0.25%, respectively. The thermogravimetric analysis (TGA) results have shown that maximum weight loss occurred for this biomass at 357 °C for pyrolysis and 287 °C for combustion conditions. Low moisture content (<10%), high hydrogen content, and higher heating value (about 18.13 MJ/kg) makes this species a potential biomass. The production of bio-char, bio-oil, and biogas from Acacia Holosericea was found 34.45%, 32.56%, 33.09% for 500 °C with a heating rate 5 °C/min and 25.81%, 37.61%, 36.58% with a heating rate 10 °C/min, respectively, in this research. From Fourier transform infrared (FTIR) spectroscopy it was shown that a strong C-H, C-O, and C=C bond exists in the bio-char of the sample.

Matched MeSH terms: Acacia
Fulltext Antioxidative and acetylcholinesterase inhibitor potential of selected honey of Sabah, Malaysian Borneo

Philip, Y., Mohd Fadzelly, A. B.

International Food Research Journal, 2015;22(5):1953-1960.
MyJurnal

Honey is a sweet substance that can be obtain from flower nectar and secretes through transformations process by honey bees. The aim of this study was to compare the antioxidant and anti-cholinesterase activities of 4 wild honey (wild honey produced by different species of bees: Apis cerana, Apis andreniformis, Apis koschevnikovi and Apis nuluensis) collected from the secondary forest and 6 commercial (young and old Mangrove, young and old Upper mountain, Tropical, Potiukan) honey of Sabah, Malaysian Borneo. Antioxidant activities were determined using FRAP (Ferric Reducing Antioxidant Power), DPPH free radical scavenging and ABTS decolourization assays. Acetylcholinesterase inhibition effect was determined by enzyme inhibition method. The results of this study showed that wild honey produced by A.cerana collected from the Acacia tree extracted using 80% methanol displayed the highest DPPH free radical scavenging activity and ABTS decolorization assays. Whereas wild honey produced by A.nuluensis collected from the Chestnut tree extracted using 80% methanol displayed the highest FRAP activity. The wild honey produced by A. nuluensis also displayed the highest acetylcholinesterase properties as the antioxidant compounds contributed to the inhibitory properties of the enzyme. Manuka honey (produced from tea tree) found to be higher in antioxidant and acetylcholinesterase properties as compared to all other samples. The same trend of bioactivity was also observed in absolute methanol extracts. Strong positive correlation was found between antioxidant and acetylcholinesterase activity. Therefore, honey has the potential as natural antioxidant and acetylcholinesterase inhibition sources with promising potential benefits to human’s health.

Matched MeSH terms: Acacia
Fulltext Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations

Perrineau MM, Le Roux C, Galiana A, Faye A, Duponnois R, Goh D, et al.

Appl Environ Microbiol, 2014 Sep;80(18):5709-16.
PMID: 25002434 DOI: 10.1128/AEM.02007-14

Introducing nitrogen-fixing bacteria as an inoculum in association with legume crops is a common practice in agriculture. However, the question of the evolution of these introduced microorganisms remains crucial, both in terms of microbial ecology and agronomy. We explored this question by analyzing the genetic and symbiotic evolution of two Bradyrhizobium strains inoculated on Acacia mangium in Malaysia and Senegal 15 and 5 years, respectively, after their introduction. Based on typing of several loci, we showed that these two strains, although closely related and originally sampled in Australia, evolved differently. One strain was recovered in soil with the same five loci as the original isolate, whereas the symbiotic cluster of the other strain was detected with no trace of the three housekeeping genes of the original inoculum. Moreover, the nitrogen fixation efficiency was variable among these isolates (either recombinant or not), with significantly high, low, or similar efficiencies compared to the two original strains and no significant difference between recombinant and nonrecombinant isolates. These data suggested that 15 years after their introduction, nitrogen-fixing bacteria remain in the soil but that closely related inoculant strains may not evolve in the same way, either genetically or symbiotically. In a context of increasing agronomical use of microbial inoculants (for biological control, nitrogen fixation, or plant growth promotion), this result feeds the debate on the consequences associated with such practices.

Matched MeSH terms: Acacia/microbiology*
Fulltext Isolation and characterization of CCoAOMT in interspecific hybrid of Acacia auriculiformis x Acacia mangium--a key gene in lignin biosynthesis

Pang SL, Ong SS, Lee HH, Zamri Z, Kandasamy KI, Choong CY, et al.

Genet. Mol. Res., 2014;13(3):7217-38.
PMID: 25222227 DOI: 10.4238/2014.September.5.7

This study was directed at the understanding of the function of CCoAOMT isolated from Acacia auriculiformis x Acacia mangium. Full length cDNA of the Acacia hybrid CCoAOMT (AhCCoAOMT) was 1024-bp long, containing 750-bp coding regions, with one major open reading frame of 249 amino acids. On the other hand, full length genomic sequence of the CCoAOMT (AhgflCCoAOMT) was 2548 bp long, containing three introns and four exons with a 5' untranslated region (5'UTR) of 391 bp in length. The 5'UTR of the characterized CCoAOMT gene contains various regulatory elements. Southern analysis revealed that the Acacia hybrid has more than three copies of the CCoAOMT gene. Real-time PCR showed that this gene was expressed in root, inner bark, leaf, flower and seed pod of the Acacia hybrid. Downregulation of the homologous CCoAOMT gene in tobacco by antisense (AS) and intron-containing hairpin (IHP) constructs containing partial AhCCoAOMT led to reduction in lignin content. Expression of the CCoAOMT in AS line (pART-HAS78-03) and IHP line (pART-HIHP78-06) was reduced respectively by 37 and 75% compared to the control, resulting in a decrease in the estimated lignin content by 24 and 56%, respectively. AhCCoAOMT was found to have altered not only S and G units but also total lignin content, which is of economic value to the pulp industry. Subsequent polymorphism analysis of this gene across eight different genetic backgrounds each of A. mangium and A. auriculiformis revealed 47 single nucleotide polymorphisms (SNPs) in A. auriculiformis CCoAOMT and 30 SNPs in A. mangium CCoAOMT.

Matched MeSH terms: Acacia/genetics*; Acacia/metabolism*
Fulltext Characterization of microRNAs expressed during secondary wall biosynthesis in Acacia mangium

Ong SS, Wickneswari R

PLoS One, 2012;7(11):e49662.
PMID: 23251324 DOI: 10.1371/journal.pone.0049662

MicroRNAs (miRNAs) play critical regulatory roles by acting as sequence specific guide during secondary wall formation in woody and non-woody species. Although thousands of plant miRNAs have been sequenced, there is no comprehensive view of miRNA mediated gene regulatory network to provide profound biological insights into the regulation of xylem development. Herein, we report the involvement of six highly conserved amg-miRNA families (amg-miR166, amg-miR172, amg-miR168, amg-miR159, amg-miR394, and amg-miR156) as the potential regulatory sequences of secondary cell wall biosynthesis. Within this highly conserved amg-miRNA family, only amg-miR166 exhibited strong differences in expression between phloem and xylem tissue. The functional characterization of amg-miR166 targets in various tissues revealed three groups of HD-ZIP III: ATHB8, ATHB15, and REVOLUTA which play pivotal roles in xylem development. Although these three groups vary in their functions, -psRNA target analysis indicated that miRNA target sequences of the nine different members of HD-ZIP III are always conserved. We found that precursor structures of amg-miR166 undergo exhaustive sequence variation even within members of the same family. Gene expression analysis showed three key lignin pathway genes: C4H, CAD, and CCoAOMT were upregulated in compression wood where a cascade of miRNAs was downregulated. This study offers a comprehensive analysis on the involvement of highly conserved miRNAs implicated in the secondary wall formation of woody plants.

Matched MeSH terms: Acacia/cytology*; Acacia/genetics*; Acacia/metabolism
Fulltext Expression profile of small RNAs in Acacia mangium secondary xylem tissue with contrasting lignin content - potential regulatory sequences in monolignol biosynthetic pathway

Ong SS, Wickneswari R

BMC Genomics, 2011 Nov 30;12 Suppl 3(Suppl 3):S13.
PMID: 22369296 DOI: 10.1186/1471-2164-12-S3-S13

BACKGROUND: Lignin, after cellulose, is the second most abundant biopolymer accounting for approximately 15-35% of the dry weight of wood. As an important component during wood formation, lignin is indispensable for plant structure and defense. However, it is an undesirable component in the pulp and paper industry. Removal of lignin from cellulose is costly and environmentally hazardous process. Tremendous efforts have been devoted to understand the role of enzymes and genes in controlling the amount and composition of lignin to be deposited in the cell wall. However, studies on the impact of downregulation and overexpression of monolignol biosynthesis genes in model species on lignin content, plant fitness and viability have been inconsistent. Recently, non-coding RNAs have been discovered to play an important role in regulating the entire monolignol biosynthesis pathway. As small RNAs have critical functions in various biological process during wood formation, small RNA profiling is an important tool for the identification of complete set of differentially expressed small RNAs between low lignin and high lignin secondary xylem.
RESULTS: In line with this, we have generated two small RNAs libraries from samples with contrasting lignin content using Illumina GAII sequencer. About 10 million sequence reads were obtained in secondary xylem of Am48 with high lignin content (41%) and a corresponding 14 million sequence reads were obtained in secondary xylem of Am54 with low lignin content (21%). Our results suggested that A. mangium small RNAs are composed of a set of 12 highly conserved miRNAs families found in plant miRNAs database, 82 novel miRNAs and a large proportion of non-conserved small RNAs with low expression levels. The predicted target genes of those differentially expressed conserved and non-conserved miRNAs include transcription factors associated with regulation of the lignin biosynthetic pathway genes. Some of these small RNAs play an important role in epigenetic silencing. Differential expression of the small RNAs between secondary xylem tissues with contrasting lignin content suggests that a cascade of miRNAs play an interconnected role in regulating the lignin biosynthetic pathway in Acacia species.
CONCLUSIONS: Our study critically demonstrated the roles of small RNAs during secondary wall formation. Comparison of the expression pattern of small RNAs between secondary xylem tissues with contrasting lignin content strongly indicated that small RNAs play a key regulatory role during lignin biosynthesis. Our analyses suggest an evolutionary mechanism for miRNA targets on the basis of the length of their 5' and 3' UTRs and their cellular roles. The results obtained can be used to better understand the roles of small RNAs during lignin biosynthesis and for the development of gene constructs for silencing of specific genes involved in monolignol biosynthesis with minimal effect on plant fitness and viability. For the first time, small RNAs were proven to play an important regulatory role during lignin biosynthesis in A. mangium.

Matched MeSH terms: Acacia/genetics*; Acacia/metabolism

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