Displaying publications 1 - 20 of 89 in total

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  1. Abd Ali LI, Ibrahim WA, Sulaiman A, Kamboh MA, Sanagi MM
    Talanta, 2016 Feb 1;148:191-9.
    PMID: 26653440 DOI: 10.1016/j.talanta.2015.10.062
    This study describes the synthesis, characterization and application of a new chrysin-based silica core-shell magnetic nanoparticles (Fe3O4@SiO2-N-chrysin) as an adsorbent for the preconcentration of Cu(II) from aqueous environment. The morphology, thermal stability and magnetic property of Fe3O4@SiO2-N-chrysin were analyzed using FTIR, FESEM, TEM, XRD, thermal analysis and VSM. The extraction efficiency of Fe3O4@SiO2-N-chrysin was analyzed using the batch wise method with flame atomic absorption spectrometry. Parameters such as the pH, the sample volume, the adsorption-desorption time, the concentration of the desorption solvent, the desorption volume, the interference effects and the regeneration of the adsorbent were optimized. It was determined that Cu(II) adsorption is highly pH-dependent, and a high recovery (98%) was achieved at a pH 6. The limit of detection (S/N=3), the limit of quantification (S/N=10), the preconcentration factor and the relative standard deviation for Cu(II) extraction were 0.3 ng mL(-1), 1 ng mL(-1), 100 and 1.9% (concentration=30 ng mL(-1), n=7), respectively. Excellent relative recoveries of 97-104% (%RSD<3.12) were achieved from samples from a spiked river, a lake and tap water. The MSPE method was also validated using certified reference materials SLRS-5 with good recovery (92.53%).
    Matched MeSH terms: Lakes
  2. Abdul Halim R, Mohd Hussain RH, Aazmi S, Halim H, Ahmed Khan N, Siddiqui R, et al.
    J Water Health, 2023 Sep;21(9):1342-1356.
    PMID: 37756200 DOI: 10.2166/wh.2023.186
    The present study aims to identify the Acanthamoeba genotypes and their pathogenic potential in three recreational lakes in Malaysia. Thirty water samples were collected by purposive sampling between June and July 2022. Physical parameters of water quality were measured in situ while chemical and microbiological analyses were performed in the laboratory. The samples were vacuum filtered through nitrate filter, cultured onto non-nutrient agar and observed microscopically for amoebic growth. DNAs from positive samples were extracted and made to react with polymerase chain reaction using specific primers. Physiological tolerance tests were performed for all Acanthamoeba-positive samples. The presence of Acanthamoeba was found in 26 of 30 water samples by PCR. The highest rate in lake waters contaminated with amoeba was in Biru Lake (100%), followed by Titiwangsa Lake (80%) and Shah Alam Lake (80%). ORP, water temperature, pH and DO were found to be significantly correlated with the presence of Acanthamoeba. The most common genotype was T4. Temperature- and osmo-tolerance tests showed that 8 (30.8%) of the genotypes T4, T9 and T11 were highly pathogenic. The presence of genotype T4 in habitats related to human activities supports the relevance of this amoeba as a potential public health concern.
    Matched MeSH terms: Lakes
  3. Abdullah MIC, Sah ASRM, Haris H
    Trop Life Sci Res, 2020 Oct;31(3):109-125.
    PMID: 33214859 DOI: 10.21315/tlsr2020.31.3.8
    An investigation study was conducted in Bukit Merah Reservoir (BMR) for the assessment of arsenic concentration in the surface sediment in 23 sampling stations. The sediment samples were digested and analysed for arsenic using Inductively Coupled Plasma-Optical Emission Spectrometry (ICP-OES). Sediment parameters such as pH (4.42 ± 0.71), redox potential (121.77 ± 42.45 mV), conductivity (205.7 ± 64.07 μS cm-1) and organic matter (25.35 ± 9.34%) were also examined. The main objectives of this study are to determine the arsenic distribution and concentration and at the same time to assess the enrichment of arsenic using the geoaccumulation index (I
    geo
    ) and enrichment factor (EF). This study shows the total arsenic concentration in the surface sediment of BMR is 4.302 ± 2.43 mg kg-1 and found to be below the threshold value of Canadian Interim Sediment Quality Guidelines (ISQG). High arsenic concentration is recorded near the southern part of the lake where anthropogenic activities are prevalent. Based on I
    geo
    , 13% of sampling stations are categorised as moderately polluted, 52.2% as unpolluted to moderately polluted and the rest is categorised as unpolluted. EF shows 78.3% stations are classified as extremely high enrichment and the rest as very high enrichment. This finding provides important information on the status of arsenic contamination in BMR and creating awareness concerning the conservation and management of the reservoir in the future.
    Matched MeSH terms: Lakes
  4. Afiq Ramlee MN, Hussin MF, Roslan A, Rosmidi FH, Pesiu E, Aisyah A Rahim N, et al.
    Data Brief, 2020 Apr;29:105328.
    PMID: 32181296 DOI: 10.1016/j.dib.2020.105328
    This data article presents the diversity of flora and selected fauna in Tasik Kenyir, Malaysia. This man-made lake once suffered huge loss of biodiversity for allowing an earth-dam construction during 1980s. Series of publications on different types of target taxa have been published separately after the post-dam construction. A biodiversity assessment was conducted in Tasik Kenyir from March 2015 until February 2016. The one year assessment were compiled with the previous published data to document and updated the biodiversity checklist in the lake. The data show that Tasik Kenyir is occupied by 113 tree species, 217 butterfly species, 35 bee species, 26 reptile species, 267 aves species and 153 mammal species. The micro-climate data was downloaded from the Malaysian Meteorological Department and analysed in R Studio to highlight the relationship between climate data and biodiversity data.
    Matched MeSH terms: Lakes
  5. Ahmad A.M., Shuhaimi Othman, Barzani-Gasim M., Mohd Alwi N.
    A preliminary study was conducted to determine the presence and abundance of aquatic worms in Lake Chini ecosystem, Pahang (Gumum Sea). Samplings were conducted twice in 2000. Water quality analysis was conducted to determine the water quality of the lake at the sampling locations. Results showed that nutrient levels in the water body was low and values for other physical parameters such as temperature, pH and conductivity suggested that Gumum Sea in Lake Chini is free from pollution. According to Malaysian interim river classification (Department of Environment, Malaysia), Lake Chini falls within class I to III which indicates good water quality. Annelida was the most dominant phylum found in the study area, which comprise of two major families namely Naididae and Tubificidae. This phylum contributed about 59% of the total individuals sampled and the rests were Arthropoda and Plathyhelmintes. Naididae was the most dominat family and contributed over 98% of the toal population of aquatic worms present. Dero, Aulophorus, Pristina, Branchiodrilus and Ripistes were amongst the dominant genera and showed good adaptations to the pollution free ecosystem of Lake Chini.
    Matched MeSH terms: Lakes
  6. Alam L, Sumaila UR, Bari MA, Rusydy I, Musthafa MS, Mokhtar M
    Environ Sci Pollut Res Int, 2022 Apr;29(16):24167-24179.
    PMID: 34822084 DOI: 10.1007/s11356-021-17715-9
    Consumption advice to ensure the health and safety of fish consumers remains urgent to handle the ever-increasing panic over heavy metal toxicity. Moreover, studies of fish consumption rarely focus on the perceptions and awareness of consumers. Considering this, the present study examines the factors determining the willingness to follow fish consumption advice as well as calculate the risk-benefit ratio and produce the vulnerability map followed by formulating fish consumption advice for consumers of two commercially important fish species, tilapia (Oreochromis niloticus) and mudfish (Ophiocephalus striatus), in the Laguna de Bay area of the Philippines. Primary data on consumers' perceptions were collected through a questionnaire, whereas heavy metal contamination data were compiled from the best available literature. We concluded that people's willingness to adopt consumption advice is mostly dependent on their existing level of fish consumption (P = 0.000). There was no discernible difference in the mean concentration of heavy metals in fish between the dry and wet seasons, with the exception of As concentrations in the samples (t15.75 = 3.72, p 
    Matched MeSH terms: Lakes
  7. Alias MIM, Hambali K, Amir A, Fauzi N, Hassin H, Yin SA
    Trop Life Sci Res, 2019 Jan;30(1):161-167.
    PMID: 30847039 MyJurnal DOI: 10.21315/tlsr2019.30.1.10
    A survey was conducted to determine the diversity of fish in Pergau Lake, Jeli, Kelantan, Malaysia from 2 September to 18 October of 2016. Fish samples were collected at seven random sampling stations around the lake by using setting trap method. The collected samples were preserved in 10% formalin solution and delivered to the laboratory for further identification process. Fourteen species, namely as Hemibagrus nemurus, Hampala macrolepidota, Clarias batrachus, Channa striata, Cyprinus carpio, Poropuntius smedleyi, Pangasius sp., Oreochromis niloticus, Oreochromis mossambicus, Leptobarbus hoevenii, Neolissochilus hexagonolepis, Tor tambroides, Osteochilus hasselti and Neolissochilus soroides, comprising of six families were collected during this study. From this study, family of Cyprinidae was the dominant species in Pergau Lake with exactly 50% of catch percentage, followed by family of Bagridae (29%), Cichlidae (10%), Clariidae (5%), Channidae (3%) and Pangasiidae (3%). This study shows that there is still a diversity of fish species in Pergau Lake, showing that the water and its environmental condition is very good.
    Matched MeSH terms: Lakes
  8. Alshishani A, Salhimi SM, Saad B
    PMID: 29241085 DOI: 10.1016/j.jchromb.2017.12.013
    A new salting-out assisted liquid-liquid extraction (SALLE) sample preparation method for the determination of the polar anti-diabetic biguanide drugs (metformin, buformin and phenformin) in blood plasma, urine and lake water samples were developed. The SALLE was performed by mixing samples (plasma (0.2mL), urine or lake water (1.0mL)) with acetonitrile (0.4mL for plasma, 0.5mL for urine or lake water), sodium hydroxide powder was then added for the phase separation. The effects of type of salting-out reagent, type of extraction solvent, volumes of acetonitrile and sample, amount of sodium hydroxide, vortexing and centrifugation times on the extraction efficiency were investigated. The upper layer, containing the biguanides, was directly injected into a HPLC unit using ZIC-HILIC column (150mm×2.1mm×3.5μm) and was detected at 236nm. The method was validated and calibration curves were linear with r2>0.99 over the range of 20-2000μgL-1for plasma and 5-2000μgL-1for urine and lake water samples. The limits of detection were in the range (3.8-5.6)μgL-1, (0.8-1.5)μgL-1and (0.3-0.8)μgL-1for plasma, urine and lake water, respectively. The accuracies in the three matrices were within 87.3-103%, 87.4-109%, 82.2-109% of the nominal concentration for metformin, buformin and phenformin, respectively. The relative standard deviation for inter- and intra -day precision were in the range of 1.0-17% for all analytes in the three matrices.
    Matched MeSH terms: Lakes/chemistry
  9. Arai T
    Ecol Evol, 2014 Oct;4(19):3812-9.
    PMID: 25614795 DOI: 10.1002/ece3.1245
    Freshwater eels have fascinated biologists for centuries due to the spectacular long-distance migrations between the eels' freshwater habitats and their spawning areas far out in the ocean and the mysteries of their ecology. The spawning areas of Atlantic eels and Japanese eel were located far offshore in the Atlantic Ocean and the Pacific Ocean, respectively, and their reproduction took place thousands of kilometers away from their growth habitats. Phylogenetic studies have revealed that freshwater eels originated in the Indonesian region. However, remarkably little is known about the life histories of tropical freshwater eels despite the fact that tropical eels are key to understanding the nature of primitive forms of catadromous migration. This study found spawning-condition tropical freshwater eels in Lake Poso, central Sulawesi, Indonesia, with considerably high gonadosomatic index values and with histologically fully developed gonads. This study provides the first evidence that under certain conditions, freshwater eels have conditions that are immediately able to spawn even in river downstream. The results suggest that, in contrast to the migrations made by the Atlantic and Japanese eels, freshwater eels originally migrated only short distances of <100 kilometers to local spawning areas adjacent to their freshwater growth habitats. Ancestral eels most likely underwent a catadromous migration from local short-distance movements in tropical coastal waters to the long-distance migrations characteristic of present-day temperate eels, which has been well established as occurring in subtropical gyres in both hemispheres.
    Matched MeSH terms: Lakes
  10. Arul P, Gowthaman NSK, John SA, Lim HN
    ACS Omega, 2020 Jun 23;5(24):14242-14253.
    PMID: 32596560 DOI: 10.1021/acsomega.9b03829
    Excess levels of nitrite ion in drinking water interact with amine functionalized compounds to form carcinogenic nitrosamines, which cause stomach cancer. Thus, it is indispensable to develop a simple protocol to detect nitrite. In this paper, a Cu-metal-organic framework (Cu-MOF) with graphene oxide (GO) composite was synthesized by ultrasonication followed by solvothermal method and then fabricated on a glassy carbon (GC) electrode for the sensitive and selective determination of nitrite contamination. The SEM image of the synthesized Cu-MOF showed colloidosome-like structure with an average size of 8 μm. Interestingly, the Cu-MOF-GO composite synthesized by ultrasonic irradiation followed by solvothermal process produce controlled size of 3 μm colloidosome-like structure. This was attributed to the formation of an exfoliated sheet-like structure of GO by ultrasonication in addition to the obvious influence of GO providing the oxygen functional groups as a nucleation node for size-controlled growth. On the other hand, the composite prepared without ultrasonication exhibited 6.6 μm size agglomerated colloidosome-like structures, indicating the crucial role of ultrasonication for the formation of size-controlled composites. XPS results confirmed the presence of Cu(II) in the as-synthesized Cu-MOF-GO based on the binding energies at 935.5 eV for Cu 2p3/2 and 955.4 eV for Cu 2p1/2. The electrochemical impedance studies in [Fe(CN)6]3-/4- redox couple at the composite fabricated electrode exhibited more facile electron transfer than that with Cu-MOF and GO modified electrodes, which helped to utilize Cu-MOF-GO for trace level determination of nitrite in environmental effluent samples. The Cu-MOF-GO fabricated electrode offered a superior sensitive platform for nitrite determination than the Cu-MOF and GO modified electrodes demonstrating oxidation at less positive potential with enhanced oxidation current. The present sensor detects nitrite in the concentration range of 1 × 10-8 to 1 × 10-4 M with the lowest limit of detection (LOD) of 1.47 nM (S/N = 3). Finally, the present Cu-MOF-GO electrode was successfully exploited for nitrite ion determination in lake and dye contaminated water samples.
    Matched MeSH terms: Lakes
  11. Azdiya Suhada Abdul Rahim Arifin, Ismayadi Ismail, Abdul Halim Abdullah, Farah Nabilah Shafiee, Idza Riati Ibrahim
    MyJurnal
    Clean water is very important for health and well-being of humans and ecosystem. However, over the year, a billion tons of industrial waste, fertilizers and chemical waste were dumped untreated into water bodies, such as rivers, lake and oceans contributing towards water pollution, then threatening human health and ecosystem. Hence, the need for clean water has urged scientists to research and find solutions for improving water quality. Application of nanoparticles in wastewater treatment improves the environmental quality by elimination of harmful pollutants in wastewater. Magnetite is one of the nanoparticles used in wastewater treatment because of its specific large surface area, high reactivity in adsorption and recoverable from treated water via magnetic separation technology. Preparation method of magnetite nanoparticles is the important key to its adsorption efficiency.
    Matched MeSH terms: Lakes
  12. Azma Hanim Ismail, Anis Amalina Mohd Adnan
    Trop Life Sci Res, 2016;27(11):31-38.
    MyJurnal
    The distribution and abundance of zooplankton species of Harapan and Aman
    Lakes were investigated in relation to physical parameters and chlorophyll-a content. Both
    lakes were characterised by the occurrence of algal bloom problem. The composition of
    zooplankton was collected at monthly intervals from November 2013 to February 2014.
    The total number of taxa in Harapan and Aman Lakes were 23 and 27, respectively.
    Rotifera was the highest abundance group represent 64% of the total species recorded
    followed by Copepoda (29%) and Cladocera (7%). Three dominant zooplankton that been
    recorded in both the lakes are Brachionus forficula, Brachionus nilsoni, and Trichocerca
    sp. High abundance of these species indicates that the lakes are eutrophic water bodies.
    Overall, zooplankton species distribution and abundance in the study sites are influenced
    by various environmental factors such as water transparency and chlorophyll-a content.
    Matched MeSH terms: Lakes
  13. Beh SY, Md Saleh N, Asman S
    Anal Methods, 2021 02 07;13(5):607-619.
    PMID: 33480366 DOI: 10.1039/d0ay02166k
    The usage of phenols in the marketplace has been increasing tremendously, which has raised concerns about their toxicity and potential effect as emerging pollutants. Phenol's structure has closely bonded phenyl and hydroxy groups, thereby making its functional characteristics closely similar to that of alcohol. As a result, phenol is used as a base compound for commercial home-based products. Hence, a simple and efficient procedure is required to determine the low concentration of phenols in environmental water samples. In this research, a method of combining magnetic nanoparticles (MNPs) with surfactant Sylgard 309 was developed to overcome the drawbacks in the classical extraction methods. In addition, this developed method improved the performance of extraction when MNPs and the surfactant Sylgard 309 were used separately, as reported in the previous research. This MNP-Sylgard 309 was synthesised by the coprecipitation method and attracts phenolic compounds in environmental water samples. Response surface methodology was used to study the parameters and responses in order to obtain an optimised condition using MNP-Sylgard 309. The parameters included the effect of pH, extraction time, and concentration of the analyte. Meanwhile, the responses measured were the peak area of the chromatogram and the percentage recovery. From this study, the results of the optimum conditions for extraction using MNP-Sylgard 309 were pH 7, extraction time of 20 min, and analyte concentration of 10.0 μg mL-1. Under the optimized conditions, MNP-Sylgard 309 showed a low limit of detection of 0.665 μg mL-1 and the limit of quantification was about 2.219 μg mL-1. MNP-Sylgard 309 was successfully applied on environmental water samples such as lake and river water. High recovery (76.23%-110.23%) was obtained.
    Matched MeSH terms: Lakes
  14. Benacer D, Woh PY, Mohd Zain SN, Amran F, Thong KL
    Microbes Environ, 2013;28(1):135-40.
    PMID: 23363618
    Leptospira species were studied in water and soils from selected urban sites in Malaysia. A total of 151 water (n=121) and soil (n=30) samples were collected from 12 recreational lakes and wet markets. All samples were filtered and inoculated into semi-solid Ellinghausen and McCullough modified by Johnson and Harris (EMJH) media supplemented with additional 5-fluorouracil. The cultures were then incubated at 30°C and observed under a dark field microscope with intervals of 10 days. A PCR assay targeting the rrs gene was used to confirm the genus Leptospira among the isolates. Subsequently, the pathogenic status of the isolates was determined using primer sets G1/G2 and Sapro1/Sapro2, which target the secY and rrs genes, respectively. The isolates were identified at serogroup level using the microscopic agglutination test (MAT) while their genetic diversity was assessed by pulsed field gel electrophoresis (PFGE). Based on dark field microscopy, 23.1% (28/121) water and 23.3% (7/30) soil cultures were positive for Leptospira spp. Of the 35 positive cultures, only 8 were pure and confirmed as Leptospira genus by PCR assay. Two out of 8 isolates were confirmed as pathogenic, 5 were saprophytic and one was intermediate. These 8 isolates were negative for the 25 reference hyperimmune rabbit sera tested in the MAT. PFGE showed that all 8 of these environmental Leptospira spp. were genetically diverse. In conclusion, the presence of pathogenic Leptospira spp. in the urban Malaysian environment may indicate and highlight the importance of water screening, especially in recreational lakes, in order to minimize any chance of Leptospira infection.
    Matched MeSH terms: Lakes/microbiology*
  15. Borkhanuddin MH, Cech G, Molnár K, Németh S, Székely C
    Syst Parasitol, 2014 Jul;88(3):245-59.
    PMID: 24935127 DOI: 10.1007/s11230-014-9496-1
    Molecular and morphometric investigations were conducted on the actinosporean morphotypes of myxosporeans surveyed in oligochaetes of Lake Balaton and Kis-Balaton Water reservoir. Oligochaetes belonging to the species Isochaetides michaelseni Lastočkin and Branchiura sowerbyi Beddard as well as to the genera Nais Dujardin, Dero Müller and Aeolosoma Ehrenberg were studied during an 18-month period. Actinosporeans were obtained exclusively from I. michaelseni (7,818 specimens) with very low prevalence (0.01-0.06%). Four new actinosporean morphotypes of the collective groups raabeia (2 types), synactinomyxon (1 type) and neoactinomyxum (1 type) were found and described, including the first synactinomyxon collective group from Hungarian biotopes and a new raabeia morphotype. Except for Synactinomyxon type 1, the 18S rDNA analysis revealed that the spores did not match any myxospore entity found in the GenBank.
    Matched MeSH terms: Lakes*
  16. Borkhanuddin MH, Goswami U, Cech G, Molnár K, Atkinson SD, Székely C
    Food Waterborne Parasitol, 2020 Sep;20:e00092.
    PMID: 32995584 DOI: 10.1016/j.fawpar.2020.e00092
    This study was a co-operative investigation of myxosporean infections of Notopterus notopterus, the bronze featherback, which is a popular food fish in the South Asian region. We examined fish from Lake Kenyir, Malaysia and the River Ganga, Hastinapur, Uttar Pradesh, India, and observed infections with two myxosporeans: Myxidium cf. notopterum (Myxidiidae) and Henneguya ganapatiae (Myxobolidae), respectively. These species were identified by myxospore morphology, morphometry and host tissue affinity, and the original descriptions supplemented with small-subunit ribosomal DNA sequences and phylogenetic analysis. Free myxospores of M. cf. notopterum were found in the gallbladder, and measured 14.7 ± 0.6 μm long and 6.3 ± 0.6 μm wide; host, tissue and myxospore dimensions overlapped with the type, but differed in morphological details (spore shape, valve cell ridges) and locality (Malaysia versus India). Plasmodia and spores of H. ganapatiae were observed in gills, and myxospores had a spore body 9.7 ± 0.4 μm long, 4.5 ± 0.5 μm wide; sample locality, host, tissue, spore morphology and morphometry matched the original description. Small-subunit ribosomal DNA sequences were deposited in GenBank (M. cf. notopterum MT365527, H. ganapatiae MT365528) and both differed by >7% from congeneric species. Although the pathogenicity and clinical manifestation of myxozoan in humans are poorly understood, consumption of raw fish meat with myxozoan infection was reported to be associated with diarrhea. Identification of current parasite fauna from N. notopterus is an essential first step in assessing pathogen risks to stocks of this important food fish.
    Matched MeSH terms: Lakes
  17. Borzák R, Borkhanuddin MH, Cech G, Molnár K, Hallett SL, Székely C
    Int J Parasitol Parasites Wildl, 2021 Aug;15:112-119.
    PMID: 33996443 DOI: 10.1016/j.ijppaw.2021.04.004
    Thelohanellus nikolskii, Achmerov, 1955 is a well-known myxozoan parasite of the common carp (Cyprinus carpio L.). Infection regularly manifests in numerous macroscopic cysts on the fins of two to three month-old pond-cultured carp fingerlings in July and August. However, a Thelohanellus infection is also common on the scales of two to three year-old common carp in ponds and natural waters in May and June. Based on myxospore morphology and tissue specificity, infection at both sites seems to be caused by the same species, namely T. nikolskii. This presumption was tested with molecular biological methods: SSU rDNA sequences of myxospores from fins of fingerlings and scales of older common carp were analysed and compared with each other and with related species available in GenBank. Sequence data revealed that the spores from the fins and scales represent the same species, T. nikolskii. Our study revealed a dichotomy in both infection site and time in T. nikolskii-infections: the fins of young carp are infected in Summer and Autumn, whereas the scales of older carp are infected in Spring. Myxosporean development of the species is well studied, little is known, however about the actinosporean stage of T. nikolskii. A previous experimental study suggests that aurantiactinomyxon actinospores of this species develop in Tubifex tubifex, Müller, 1774. The description included spore morphology but no genetic sequence data (Székely et al., 1998). We examined >9000 oligochaetes from Lake Balaton and Kis-Balaton Water Reservoire searching for the intraoligochaete developmental stage of myxozoans. Five oligochaete species were examined, Isochaetides michaelseni Lastochin, 1936, Branchiura sowerbyi Beddard, 1892, Nais sp., Müller, 1774, Dero sp. Müller, 1774 and Aelosoma sp. Ehrenberg, 1828. Morphometrics and SSU rDNA sequences were obtained for the released actinospores. Among them, from a single Nais sp., the sequence of an aurantiactinomyxon isolate corresponded to the myxospore sequences of T. nikolskii.
    Matched MeSH terms: Lakes
  18. Chan KG, Kher HL, Chang CY, Yin WF, Tan KH
    Genome Announc, 2015;3(2).
    PMID: 25792063 DOI: 10.1128/genomeA.00145-15
    Dickeya chrysanthemi is well known as a plant pathogen that caused major blackleg in the European potato industry in the 1990s. D. chrysanthemi strain L11 was discovered in a recreational lake in Malaysia. Here, we present its draft genome sequence.
    Matched MeSH terms: Lakes
  19. Chatterjee A, Sicheritz-Pontén T, Yadav R, Kondabagil K
    Sci Rep, 2019 03 06;9(1):3690.
    PMID: 30842490 DOI: 10.1038/s41598-019-40171-y
    We report the detection of genomic signatures of giant viruses (GVs) in the metagenomes of three environment samples from Mumbai, India, namely, a pre-filter of a household water purifier, a sludge sample from wastewater treatment plant (WWTP), and a drying bed sample of the same WWTP. The de novo assembled contigs of each sample yielded 700 to 2000 maximum unique matches with the GV genomic database. In all three samples, the maximum number of reads aligned to Pandoraviridae, followed by Phycodnaviridae, Mimiviridae, Iridoviridae, and other Megaviruses. We also isolated GVs from every environmental sample (n = 20) we tested using co-culture of the sample with Acanthomoeba castellanii. From this, four randomly selected GVs were subjected to the genomic characterization that showed remarkable cladistic homology with the three GV families viz., Mimivirirdae (Mimivirus Bombay [MVB]), Megaviruses (Powai lake megavirus [PLMV] and Bandra megavius [BAV]), and Marseilleviridae (Kurlavirus [KV]). All 4 isolates exhibited remarkable genomic identity with respective GV families. Functionally, the genomes were indistinguishable from other previously reported GVs, encoding nearly all COGs across extant family members. Further, the uncanny genomic homogeneity exhibited by individual GV families across distant geographies indicate their yet to be ascertained ecological significance.
    Matched MeSH terms: Lakes/virology*
  20. Elzwayie A, Afan HA, Allawi MF, El-Shafie A
    Environ Sci Pollut Res Int, 2017 May;24(13):12104-12117.
    PMID: 28353110 DOI: 10.1007/s11356-017-8715-0
    Several research efforts have been conducted to monitor and analyze the impact of environmental factors on the heavy metal concentrations and physicochemical properties of water bodies (lakes and rivers) in different countries worldwide. This article provides a general overview of the previous works that have been completed in monitoring and analyzing heavy metals. The intention of this review is to introduce the historical studies to distinguish and understand the previous challenges faced by researchers in analyzing heavy metal accumulation. In addition, this review introduces a survey on the importance of time increment sampling (monthly and/or seasonally) to comprehend and determine the rate of change of different parameters on a monthly and seasonal basis. Furthermore, suggestions are made for future research to achieve more understandable figures on heavy metal accumulation by considering climate conditions. Thus, the intent of the current study is the provision of reliable models for predicting future heavy metal accumulation in water bodies in different climates and pollution conditions so that water management can be achieved using intelligent proactive strategies and artificial neural network (ANN) techniques.
    Matched MeSH terms: Lakes/chemistry*
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