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Hemoperitoneum after accidental dislodgement and subsequent replacement of PEG tube

Tan YM, Abdullah M, Goh KL

Gastrointest Endosc, 2001 May;53(6):671-3.
PMID: 11323604
Inhibitory effects of palm α-, γ- and δ-tocotrienol on lipopolysaccharide-induced nitric oxide production in BV2 microglia

Tan SW, Ramasamy R, Abdullah M, Vidyadaran S

Cell Immunol, 2011;271(2):205-9.
PMID: 21839427 DOI: 10.1016/j.cellimm.2011.07.012

Anti-inflammatory actions of the vitamin E fragment tocotrienol have not been described for microglia. Here, we screened palm α-, γ- and δ-tocotrienol isoforms and Tocomin® 50% (contains spectrum of tocotrienols and tocopherols) for their ability to limit nitric oxide (NO) production by BV2 microglia. Microglia were treated with varying doses of tocotrienols for 24h and stimulated with 1 μg/ml lipopolysaccharide (LPS). All tocotrienol isoforms reduced NO release by LPS-stimulated microglia, with 50 μM being the most potent tocotrienol dose. Of the isoforms tested, δ-tocotrienol lowered NO levels the most, reducing NO by approximately 50% at 48 h post-LPS treatment (p
Differential proteomic analysis of embryogenic lines in oil palm (Elaeis guineensis Jacq)

Tan HS, Liddell S, Ong Abdullah M, Wong WC, Chin CF

J Proteomics, 2016 06 30;143:334-345.
PMID: 27130535 DOI: 10.1016/j.jprot.2016.04.039

Oil palm tissue culture is one way to produce superior oil palm planting materials. However, the low rate of embryogenesis is a major hindrance for the adoption of this technology in oil palm tissue culture laboratories. In this study, we use proteomic technologies to compare differential protein profiles in leaves from palms of high and low proliferation rates in tissue culture in order to understand the underlying biological mechanism for the low level of embryogenesis. Two protein extraction methods, namely trichloroacetic acid/acetone precipitation and polyethylene glycol fractionation were used to produce total proteins and fractionated protein extracts respectively, with the aim of improving the resolution of protein species using two-dimensional gel electrophoresis. A total of 40 distinct differential abundant protein spots were selected from leaf samples collected from palms with proven high and low proliferation rates. The variant proteins were subsequently identified using mass spectrometric analysis. Twelve prominent protein spots were then characterised using real-time polymerase chain reaction to compare the mRNA expression and protein abundant profiles. Three proteins, namely triosephosphate isomerase, l-ascorbate peroxidase, and superoxide dismutase were identified to be potential biomarker candidates at both the protein abundant and mRNA expression levels.
BIOLOGICAL SIGNIFICANCE: In this study, proteomic analysis was used to identify abundant proteins from total protein extracts. PEG fractionation was used to reveal lower abundant proteins from both high and low proliferation embryogenic lines of oil palm samples in tissue culture. A total of 40 protein spots were found to be significant in abundance and the mRNA levels of 12 of these were assessed using real time PCR. Three proteins namely, triosephosphate isomerase, l-ascorbate peroxidase and superoxide dismutase were found to be concordant in their mRNA expression and protein abundance. Triosephosphate isomerase is a key enzyme in glycolysis. Both l-ascorbate peroxidase and superoxide dismutase play a role in anti-oxidative scavenging defense systems. These proteins have potential for use as biomarkers to screen for high and low embryogenic oil palm samples.
Proteomic profiling of mature leaves from oil palm (Elaeis guineensis Jacq.)

Tan HS, Jacoby RP, Ong-Abdullah M, Taylor NL, Liddell S, Chee WW, et al.

Electrophoresis, 2017 04;38(8):1147-1153.
PMID: 28198080 DOI: 10.1002/elps.201600506

Oil palm is one of the most productive oil bearing crops grown in Southeast Asia. Due to the dwindling availability of agricultural land and increasing demand for high yielding oil palm seedlings, clonal propagation is vital to the oil palm industry. Most commonly, leaf explants are used for in vitro micropropagation of oil palm and to optimize this process it is important to unravel the physiological and molecular mechanisms underlying somatic embryo production from leaves. In this study, a proteomic approach was used to determine protein abundance of mature oil palm leaves. To do this, leaf proteins were extracted using TCA/acetone precipitation protocol and separated by 2DE. A total of 191 protein spots were observed on the 2D gels and 67 of the most abundant protein spots that were consistently observed were selected for further analysis with 35 successfully identified using MALDI TOF/TOF MS. The majority of proteins were classified as being involved in photosynthesis, metabolism, cellular biogenesis, stress response, and transport. This study provides the first proteomic assessment of oil palm leaves in this important oil crop and demonstrates the successful identification of selected proteins spots using the Malaysian Palm Oil Board (MPOB) Elaeis guineensis EST and NCBI-protein databases. The MS data have been deposited in the ProteomeXchange Consortium database with the data set identifier PXD001307.
Fulltext School bag load and its effect on erector spinae muscle and low back pain among primary school children in Malaysia

Tamrin SBM, Ai LP, Hamzah R, Abdullah MY, Hanafi SS

Malaysian Journal of Medicine and Health Sciences, 2005;1(1):21-31.

Objective: A cross-sectional study was conducted to determine and evaluate the effects of schoolbag load on electromyography (EMG) activity of the erector spinae muscle.
Methods: Eighty-four primary schoolchildren were selected from two national medium primary schools in Seri Kembangan, 42 from Primary Two (P2) and 42 from Primary Five (PS), aged 8 and 11 respectively. Data were collected through interviews, anthropometries measurements, the weight of schoolbag load and surface electromyography (SEMG) of the erector spinae using Muscle Tester ME3000f'®. SurfaceAg-AgCl electrodes were used to measure: unloaded standing and walking, and loaded standing and walking.
Results: The study revealed that the erector spinae was found to be more efficient in loaded standing probably due to other trunk muscle co-activity compared to unloaded standing (p<0.05). However, the erector spinae was less efficient when loads were carried on the back while walking, compared to unloaded walking. When the schoolbag was carried over both shoulders, forces generated by the erector spinae were reduced and resulted in a more efficient use of the erector spinae compared to other asymmetrical carrying methods (p<0.05).
Conclusions: Bending slightly forward when carrying schoolbag was found to reduce the forces generated by the erector spinae compared to normal sagittal posture (p<0.05), however no significant difference was found between the different frontal postures. A significant inverse relationship (p<0.01) between the weight of schoolbag load and the average electromyography (AEMG), showed that the signifieance of the erector spinae muscle was reduced when a heavier schoolbag load was carried, owing to other trunk muscles co-activity. The study also revealed that apart from age of schoolchildren, family history of back pain, exposure to environmental tobacco smoke (ETS), weight of the schoolbag and method of carrying schoolbag also play important role as risk factors for back pain.
Keywords: Electromyography, schoolbag, primary school, back pain
The Association between risk factors and low back pain among commercial vehicle drivers in peninsular Malaysia: a preliminary result

Tamrin SB, Yokoyama K, Jalaludin J, Aziz NA, Jemoin N, Nordin R, et al.

Ind Health, 2007 Apr;45(2):268-78.
PMID: 17485871

To determine the risk factors associated with complain of low back pain. A cross sectional study was done from June 2004 until August 2005. Seven hundred and sixty commercial vehicle drivers from 11 bus companies in central, northern and eastern regions in Malaysia participated in this study. Modified Nordic questionnaire was used to determine the prevalence of low back pain; Maestro human vibration meter was used to measure the personal R.M.S values of lateral, anterior-posterior and vertical axes. Modified Owas was used to assess the awkward posture of the driver torso namely, bending forward movement, leaning, sitting straight and twisting. Profile of Mood States (POMS) was used to evaluate the mood states of bus drivers with complain of low back pain. A high prevalence of low back pain (60.4%) among Malaysian commercial vehicle drivers was found. Logistic regression analysis controlling for age, income, education level and non occupational activities revealed that the following factors were related to low back pain: Tension-anxiety [1.080, 95% CI 1.041-1.121], depression dejection [1.047, 95% CI 1.023-1.072], anger-hostility [1.053, 95% CI 1.027-1.081], fatigue [1.132, 95% CI 1.089-1.177] and confusion [1.114, 95% CI 1.061-1.169] of POMS, length of employment [1.001, 95% CI 1.0-1.003], steering wheel adjustment [1.521, 95% CI 1.101-2.101], perception of exposing to vibration [1.943, 95% CI 1.389-2.719]. In conclusion, combinations of risks lead to high increase of low back pain complain among Malaysian bus drivers.
An economic feasibility assessment of implementing photovoltaic module reflectors under Malaysian meteorological conditions

Sultan SM, Abdullah MZ, Tso CP, Abllah NFN, Zakaria N, Ajeel RK, et al.

Sci Rep, 2024 Feb 09;14(1):3349.
PMID: 38336991 DOI: 10.1038/s41598-024-54031-x

The use of a reflector can increase the solar radiation on the photovoltaic module (PV) surface, whereby the energy output can be improved. However, the economic feasibility may need to be considered too. This study is conducted, for the first time, due to the lack of studies regarding the economic feasibility assessment of implementing reflectors under the Malaysian meteorological conditions. The outcome will give information about the suitability for implementing a PV reflector in Malaysia through an experimental setup at a sewage treatment site, for two months in 2022. The Malaysian meteorological data, which include daily solar radiation, ambient temperature and wind velocity, were collected to study the output energy, efficiency and the economic perspective of a PV. In February 2022, the PV was operating without a reflector and the averaged values for the monthly solar radiation, ambient temperature and wind velocity were 539.9 MJ/m2, 28.4 °C and 2.2 m/s, respectively, which resulted in an output energy of 106.43 kWh. On the other hand, for April 2022, the PV was operating with a reflector. With the respective averaged input parameters 544.98 MJ/m2, 28.9 °C and 1.51 m/s, the output energy was 121.94 kWh. It is thus shown that the PV with a reflector increases the PV's output energy by 14.57%. Also, it is shown that the cost-effective factor value is 0.955 which means that the PV reflector is economically feasible to be implemented under the Malaysian meteorological conditions. Hence, extensive research should be conducted to improve the performance of PV reflectors. The findings of this paper maybe useful for researchers and/or manufacturers of PV reflectors.
Fulltext Existence of golden proportion in maxillary anterior teeth of University of Malaya dental students

Sulaiman, E., Yaakub, M.S., Zulkifli, N.A., Abdullah, M., Gonzalez, M.A.G.

Ann Dent, 2010;17(1):9-14.
MyJurnal

Purpose of the study: The objective of this study was to investigate the existence of the golden proportion between the width of the maxillary anterior teeth of undergraduate dental students at University of Malaya. Materials and method: Standardised photographs of 100 dental students’ smiles displaying only the lips and the teeth were captured. The images were transferred to a personal computer and the width of the maxillary anterior teeth was measured using an Image
Analyzer (Leiqa QWin). Calculations were made according to the Theory of Golden Proportion. The
data were statistically analysed using paired student T-test (α
Fulltext Graphene-based hybrid nanoparticle of doxorubicin for cancer chemotherapy

SreeHarsha N, Maheshwari R, Al-Dhubiab BE, Tekade M, Sharma MC, Venugopala KN, et al.

Int J Nanomedicine, 2019;14:7419-7429.
PMID: 31686814 DOI: 10.2147/IJN.S211224

Background: Prostate cancer (PC) has the highest prevalence in men and accounts for a high rate of neoplasia-related death. Doxorubicin (DOX) is one of the most widely used anti-neoplastic drugs for prostate cancer among others. However, it has low specificity and many side effects and affects normal cells. More recently, there have been newly developed drug delivery tools which are graphene or graphene-based, used to increase the specificity of the delivered drug molecules. The graphene derivatives possess both π-π stacking and increased hydrophobicity, factors that increase the likelihood of drug delivery. Despite this, the hydrophilicity of graphene remains problematic, as it induced problems with stability. For this reason, the use of a chitosan coating remains one way to modify the surface features of graphene.
Method: In this investigation, a hybrid nanoparticle that consisted of a DOX-loaded reduced graphene oxide that is stabilized with chitosan (rGOD-HNP) was developed.
Result: The newly developed rGOD-HNP demonstrated high biocompatibility and efficiency in entrapping DOX (~65%) and releasing it in a controlled manner (~50% release in 48 h). Furthermore, it was also demonstrated that rGOD-HNP can intracellularly deliver DOX and more specifically in PC-3 prostate cancer cells.
Conclusion: This delivery tool offers a feasible and viable method to deliver DOX photo-thermally in the treatment of prostate cancer.
Influence of long -term thermal cycling and masticatory loading simulation on bond strength of roots filled with epoxy resin and calcium silicate based sealers

Smran A, Abdullah M, Ahmad NA, Alrahlah A, Al-Maflehi N, Samran A

BMC Oral Health, 2023 Sep 18;23(1):673.
PMID: 37723511 DOI: 10.1186/s12903-023-03377-1

BACKGROUND: The aim of this study was to evaluate the effect of thermal and mechanical cyclic aging using a mastication simulator on push-out bond strength of mandibular premolars obturated with AH Plus and BioRoot RCS root canal sealers.
METHODS: With REVO-S files up to SU/0.06 taper, 48 single-rooted premolar teeth were instrumented. The teeth were randomly divided into two main groups (n = 24) based on the two root canal sealers used (AH Plus and BioRoot RCS). All teeth were obturated with h matched-taper single-cone. Each main group was then subdivided into three subgroups (A, B, and C) (n = 8). Group A served as the negative control group (no-thermocycling aging). While groups B and C were subjected to thermal changes in a thermocycler machine (15,000 and 30,000 thermal cycles, respectively), followed by two different dynamic loading periods, 3 × 105 and 6 × 105 in a masticatory simulator with a nominal load of 5 kg at 1.2 Hz which represent roughly 1½ and 3 years of clinical function respectively. 2 mm slice at 3 levels, apical, middle, and coronal, to obtain 3 sections were prepared and subjected to push-out test using a universal testing machine. Statistical analysis was performed using analysis of variance (ANOVA) followed by a Tukey post hoc comparisons test and an independent T-test. A significance level of 5% was used.
RESULTS: After thermal-mechanical cyclic aging, the two root canal sealers showed a significantly decreased in push-out bond strength (p
Fulltext Evaluation of stress distributions of calcium silicate-based root canal sealer in bulk or with main core material: A finite element analysis study

Smran A, Abdullah M, Ahmad NA, Ben Yahia F, Fouda AM, Alturaiki SA, et al.

PLoS One, 2024;19(3):e0299552.
PMID: 38483853 DOI: 10.1371/journal.pone.0299552

This research aimed to assess the stress distribution in lower premolars that were obturated with BioRoot RCS or AH Plus, with or without gutta percha (GP), and subjected to vertical and oblique forces. One 3D geometric model of a mandibular second premolar was created using SolidWorks software. Eight different scenarios representing different root canal filling techniques, single cone technique with GP and bulk technique with sealer only with occlusal load directions were simulated as follows: Model 1 (BioRoot RCS sealer and GP under vertical load [VL]), Model 2 (BioRoot RCS sealer and GP under oblique load [OL]), Model 3 (AH Plus sealer with GP under VL), Model 4 (AH Plus sealer with GP under OL), Model 5 (BioRoot RCS sealer in bulk under VL), Model 6 (BioRoot RCS in bulk under OL), Model 7 (AH Plus sealer in bulk under VL), and Model 8 (AH Plus sealer in bulk under OL). A static load of 200 N was applied at three occlusal contact points, with a 45° angle from lingual to buccal. The von Mises stresses in root dentin were higher in cases where AH Plus was used compared to BioRoot RCS. Furthermore, shifting the load to an oblique direction resulted in increased stress levels. Replacing GP with sealer material had no effect on the dentin maximum von Mises stress in BioRoot RCS cases. Presence of a core material resulted in lower stress in dentin for AH Plus cases, however, it did not affect the stress levels in dentin for cases filled with BioRoot RCS. Stress distribution in the dentin under oblique direction was higher regardless of sealer or technique used.
Ingestion of food pellets containing Escherichia coli overexpressing the heat-shock protein DnaK protects Penaeus vannamei (Boone) against Vibrio harveyi (Baumann) infection

Sinnasamy S, Noordin NM, MacRae TH, Bin Abdullah MI, Bossier P, Wahid ME, et al.

J Fish Dis, 2016 May;39(5):577-84.
PMID: 26132358 DOI: 10.1111/jfd.12390

Feeding aquatic animals with bacterial encapsulated heat-shock proteins (Hsps) is potentially a new method to combat vibriosis, an important disease affecting aquatic animals used in aquaculture. Food pellets comprised of shrimp and containing Escherichia coli overexpressing either DnaK-DnaJ-GrpE, the prokaryotic equivalents of Hsp70-Hsp40-Hsp20, or only DnaK were fed to juveniles of the white leg shrimp Penaeus vannamei, and protection against pathogenic Vibrio harveyi was determined. Maintaining pellets at different temperatures for varying lengths of time reduced the number of live adhering E. coli, as did contact with sea water, demonstrating that storage and immersion adversely affected bacterial survival and attachment to pellets. Feeding P. vannamei with E. coli did not compromise their survival, indicating that the bacteria were not pathogenic to shrimp. Feeding P. vannamei with pellets containing bacteria overproducing DnaK (approximately 60 cells g(-1) pellets) boosted P. vannamei survival twofold against V. harveyi, suggesting that DnaK plays a role in Vibrio tolerance. Pellets containing DnaK were effective in providing protection to P. vannamei for up to 2 weeks before loss of viability and that DnaK encapsulated by these bacteria enhanced shrimp resistance against Vibrio infection.
Fulltext The oil palm VIRESCENS gene controls fruit colour and encodes a R2R3-MYB

Singh R, Low ET, Ooi LC, Ong-Abdullah M, Nookiah R, Ting NC, et al.

Nat Commun, 2014 Jun 30;5:4106.
PMID: 24978855 DOI: 10.1038/ncomms5106

Oil palm, a plantation crop of major economic importance in Southeast Asia, is the predominant source of edible oil worldwide. We report the identification of the virescens (VIR) gene, which controls fruit exocarp colour and is an indicator of ripeness. VIR is a R2R3-MYB transcription factor with homology to Lilium LhMYB12 and similarity to Arabidopsis production of anthocyanin pigment1 (PAP1). We identify five independent mutant alleles of VIR in over 400 accessions from sub-Saharan Africa that account for the dominant-negative virescens phenotype. Each mutation results in premature termination of the carboxy-terminal domain of VIR, resembling McClintock's C1-I allele in maize. The abundance of alleles likely reflects cultural practices, by which fruits were venerated for magical and medicinal properties. The identification of VIR will allow selection of the trait at the seed or early-nursery stage, 3-6 years before fruits are produced, greatly advancing introgression into elite breeding material.
Fulltext Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds

Singh R, Ong-Abdullah M, Low ET, Manaf MA, Rosli R, Nookiah R, et al.

Nature, 2013 Aug 15;500(7462):335-9.
PMID: 23883927 DOI: 10.1038/nature12309

Oil palm is the most productive oil-bearing crop. Although it is planted on only 5% of the total world vegetable oil acreage, palm oil accounts for 33% of vegetable oil and 45% of edible oil worldwide, but increased cultivation competes with dwindling rainforest reserves. We report the 1.8-gigabase (Gb) genome sequence of the African oil palm Elaeis guineensis, the predominant source of worldwide oil production. A total of 1.535 Gb of assembled sequence and transcriptome data from 30 tissue types were used to predict at least 34,802 genes, including oil biosynthesis genes and homologues of WRINKLED1 (WRI1), and other transcriptional regulators, which are highly expressed in the kernel. We also report the draft sequence of the South American oil palm Elaeis oleifera, which has the same number of chromosomes (2n = 32) and produces fertile interspecific hybrids with E. guineensis but seems to have diverged in the New World. Segmental duplications of chromosome arms define the palaeotetraploid origin of palm trees. The oil palm sequence enables the discovery of genes for important traits as well as somaclonal epigenetic alterations that restrict the use of clones in commercial plantings, and should therefore help to achieve sustainability for biofuels and edible oils, reducing the rainforest footprint of this tropical plantation crop.
Fulltext The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK

Singh R, Low ET, Ooi LC, Ong-Abdullah M, Ting NC, Nagappan J, et al.

Nature, 2013 Aug 15;500(7462):340-4.
PMID: 23883930 DOI: 10.1038/nature12356

A key event in the domestication and breeding of the oil palm Elaeis guineensis was loss of the thick coconut-like shell surrounding the kernel. Modern E. guineensis has three fruit forms, dura (thick-shelled), pisifera (shell-less) and tenera (thin-shelled), a hybrid between dura and pisifera. The pisifera palm is usually female-sterile. The tenera palm yields far more oil than dura, and is the basis for commercial palm oil production in all of southeast Asia. Here we describe the mapping and identification of the SHELL gene responsible for the different fruit forms. Using homozygosity mapping by sequencing, we found two independent mutations in the DNA-binding domain of a homologue of the MADS-box gene SEEDSTICK (STK, also known as AGAMOUS-LIKE 11), which controls ovule identity and seed development in Arabidopsis. The SHELL gene is responsible for the tenera phenotype in both cultivated and wild palms from sub-Saharan Africa, and our findings provide a genetic explanation for the single gene hybrid vigour (or heterosis) attributed to SHELL, via heterodimerization. This gene mutation explains the single most important economic trait in oil palm, and has implications for the competing interests of global edible oil production, biofuels and rainforest conservation.
Fulltext Variation for heterodimerization and nuclear localization among known and novel oil palm SHELL alleles

Singh R, Low EL, Ooi LC, Ong-Abdullah M, Ting NC, Nookiah R, et al.

New Phytol, 2020 04;226(2):426-440.
PMID: 31863488 DOI: 10.1111/nph.16387

Oil palm breeding involves crossing dura and pisifera palms to produce tenera progeny with greatly improved oil yield. Oil yield is controlled by variant alleles of a type II MADS-box gene, SHELL, that impact the presence and thickness of the endocarp, or shell, surrounding the fruit kernel. We identified six novel SHELL alleles in noncommercial African germplasm populations from the Malaysian Palm Oil Board. These populations provide extensive diversity to harness genetic, mechanistic and phenotypic variation associated with oil yield in a globally critical crop. We investigated phenotypes in heteroallelic combinations, as well as SHELL heterodimerization and subcellular localization by yeast two-hybrid, bimolecular fluorescence complementation and gene expression analyses. Four novel SHELL alleles were associated with fruit form phenotype. Candidate heterodimerization partners were identified, and interactions with EgSEP3 and subcellular localization were SHELL allele-specific. Our findings reveal allele-specific mechanisms by which variant SHELL alleles impact yield, as well as speculative insights into the potential role of SHELL in single-gene oil yield heterosis. Future field trials for combinability and introgression may further optimize yield and improve sustainability.
A genus- and species-specific nested polymerase chain reaction malaria detection assay for epidemiologic studies

Singh B, Bobogare A, Cox-Singh J, Snounou G, Abdullah MS, Rahman HA

Am J Trop Med Hyg, 1999 Apr;60(4):687-92.
PMID: 10348249

A nested polymerase chain reaction (PCR) assay that uses Plasmodium genus-specific primers for the initial PCR (nest 1) amplification and either genus- or species-specific primers for the nest 2 amplifications was tested on laboratory and field samples. With in vitro cultured Plasmodium falciparum-infected blood samples, it was capable of detecting six parasites/microl of blood using DNA prepared from 25-microl blood spots on filter paper. The assay was evaluated on fingerprick blood samples collected on filter paper from 129 individuals living in a malaria-endemic area in Malaysia. Malaria prevalence by genus-specific nested PCR was 35.6% (46 of 129) compared with 28.7% (37 of 129) by microscopy. The nested PCR detected seven more malaria samples than microscopy in the first round of microscopic examination, malaria in three microscopically negative samples, six double infections identified as single infections by microscopy and one triple infection identified as a double infection by microscopy. The nested PCR assay described is a sensitive technique for collecting accurate malaria epidemiologic data. When coupled with simple blood spot sampling, it is particularly useful for screening communities in remote regions of the world.
Detection of malaria in Malaysia by nested polymerase chain reaction amplification of dried blood spots on filter papers

Singh B, Cox-Singh J, Miller AO, Abdullah MS, Snounou G, Rahman HA

Trans R Soc Trop Med Hyg, 1996 9 1;90(5):519-21.
PMID: 8944260

A modified nested polymerase chain reaction (PCR) method for detection of Plasmodium falciparum, P. vivax and P. malariae was combined with a simple blood collection and deoxyribonucleic acid (DNA) extraction method and evaluated in Malaysia. Finger-prick blood samples from 46 hospital patients and 120 individuals living in malaria endemic areas were spotted on filter papers and dried. The simple Chelex method was used to prepare DNA templates for the nested PCR assay. Higher malaria prevalence rates for both clinical (78.2%) and field samples (30.8%) were obtained with the nested PCR method than by microscopy (76.1% and 27.5%, respectively). Nested PCR was more sensitive than microscopy in detecting mixed P. falciparum and P. vivax infections, detected 5 more malaria samples than microscopy on the first round of microscopical examination, and detected malaria in 3 microscopically negative samples. Nested PCR failed to detect parasite DNA in 2 microscopically positive samples, an overall sensitivity of 97.4% compared to microscopy. The nested PCR method, when coupled with simple dried blood spot sampling, is a useful tool for collecting accurate malaria epidemiological data, particularly in remote regions of the world.
Fulltext Development of double-layer metamaterial with high effective medium ratio values for S- and C-band applications

Sifat R, Faruque MRI, Ramachandran T, Abdullah M, Islam MT, Al-Mugren KS

Heliyon, 2024 Jan 15;10(1):e23851.
PMID: 38192815 DOI: 10.1016/j.heliyon.2023.e23851

This study introduces a compact double negative metamaterial (DNM) composed of three split rings connected slab resonator (TSRCSR) based double-layer design with a high 13.9 EMR (effective medium ratio) value. A double-layer patch is introduced to achieve the novel double negative properties, including negative behaviours of effective medium parameters, including refractive index, permittivity, and permeability with a high effective medium ratio for the miniaturised size of the introduced unconventional material that is highly suitable for microwave S and C band covering applications. The popular low-loss Rogers RT5880 (thickness 1.575 mm) substrate and copper resonator materials are utilized to develop the metamaterial unit cell that offers triple resonance between frequencies from 1 to 8 GHz. Therefore, the proposed metamaterial exhibits resonance peaks at 2.75, 5.2, and 6.3 GHz, suitable for radar, communication satellite, and long-distance telecommunication applications, respectively. The commercially available simulator known as Computer Simulation Technology (CST) is adopted to develop and simulate the 8 × 8 mm2 metamaterial design. The simulation results of the introduced TSRCSR design structure were verified by adopting the Ansys High-Frequency Structure Simulator (HFSS). Furthermore, it was then proved with the help of equivalent circuit model findings gained from the Advanced Design Structure (ADS) software. On the other hand, the analytical results were further validated by measuring the TSRCSR design utilizing a Vector Network Analyzer (VNA). These analyses become one of the novelties of this work, where the compact TSRCSR metamaterial successfully gained small discrepancies in transmission coefficient values when compared to both analytical and measurement results. The proposed metamaterial is highly suggested for communication devices for its extensive effective characteristics and compactness.
Fulltext SRR inspired inversion symmetry-shaped left-handed metamaterial with a high effective medium ratio for ASR and WLAN applications

Sifat R, Faruque MRI, Ramachandran T, Abdullah M, Islam MT, Al-Mugren KS

Heliyon, 2024 Feb 29;10(4):e26232.
PMID: 38390122 DOI: 10.1016/j.heliyon.2024.e26232

This study developed a metamaterial-inspired split-ring resonator (SRR) based inversion symmetry-shaped structure for airport surveillance radar and local area wireless network applications. The proposed device exhibited suitability for S- and C-band applications, featuring distinct resonance peaks at 2.8 and 4.9 GHz, respectively. The two-layer double negative metamaterial unit cell comprises a copper-based resonator, patch, and a low-loss substrate material known as Rogers RT5800 with a thickness of 1.575 mm. The 8 × 8 mm2 structure unit cell was identified with an effective medium ratio (EMR) of 13.4 at the resonance peak of 2.8 GHz. With the alteration of the metamaterial unit cell structure, the electric field, surface current distribution, magnetic field, and design evolution were observed, analysed, and investigated in this study. Meanwhile, the retrieved data from the reflection and transmission coefficients from CST Microwave Studio were validated using the Ansys High-Frequency Structure Simulator (HFSS) software. A Vector Network Analyzer (VNA) further measured the numerical results. Based on the findings, the proposed novel double negative metamaterial device is suitable for radar communication and satellite applications, especially airport surveillance radar (ASR) and wireless local area network (WLAN), due to its high EMR at the desired resonance frequency.

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