Displaying publications 1 - 20 of 34 in total

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  1. Zaldi NB, Hussen RSD, Lee SM, Halcovitch NR, Jotani MM, Tiekink ERT
    Acta Crystallogr E Crystallogr Commun, 2017 Jun 01;73(Pt 6):842-848.
    PMID: 28638641 DOI: 10.1107/S2056989017006855
    The title compound, [Sn(CH3)2(C5H8NOS2)2], has the Sn(IV) atom bound by two methyl groups which lie over the weaker Sn-S bonds formed by two asymmetrically chelating di-thio-carbamate ligands so that the coordination geometry is skew-trapezoidal bipyramidal. The most prominent feature of the mol-ecular packing are secondary Sn⋯S inter-actions [Sn⋯S = 3.5654 (7) Å] that lead to centrosymmetric dimers. These are connected into a three-dimensional architecture via methyl-ene-C-H⋯S and methyl-C-H⋯O(morpholino) inter-actions. The Sn⋯S inter-actions are clearly evident in the Hirshfeld surface analysis of the title compound along with a number of other inter-molecular contacts.
    Matched MeSH terms: Biophysical Phenomena
  2. Zainodin bin Haji Jubok
    In this paper a class of capital investment problem is considered within the context of mathematical programming. The usual and commonly used approach is presented upon the basis of the next present value criterion, and a branch and bound method is discussed for a model under extended assumptions.
    Dalam kertas ini satu kelas masalah pelaburan kapital difikirkan di dalam konteks pengaturcaraan matematik. Pendekatan biasa dan selalu digunakan, dikemukakan berasaskan kriterium Nilai Semasa Berikut dan satu kaedah bercabang dan terbatas dibincangkan untuk satu model di bawah anggapan yang diperluaskan.
    Matched MeSH terms: Biophysical Phenomena
  3. Wiedenmann J, Bocquillon E, Deacon RS, Hartinger S, Herrmann O, Klapwijk TM, et al.
    Nat Commun, 2016;7:10303.
    PMID: 26792013 DOI: 10.1038/ncomms10303
    The Josephson effect describes the generic appearance of a supercurrent in a weak link between two superconductors. Its exact physical nature deeply influences the properties of the supercurrent. In recent years, considerable efforts have focused on the coupling of superconductors to the surface states of a three-dimensional topological insulator. In such a material, an unconventional induced p-wave superconductivity should occur, with a doublet of topologically protected gapless Andreev bound states, whose energies vary 4π-periodically with the superconducting phase difference across the junction. In this article, we report the observation of an anomalous response to rf irradiation in a Josephson junction made of a HgTe weak link. The response is understood as due to a 4π-periodic contribution to the supercurrent, and its amplitude is compatible with the expected contribution of a gapless Andreev doublet. Our work opens the way to more elaborate experiments to investigate the induced superconductivity in a three-dimensional insulator.
    Matched MeSH terms: Biophysical Phenomena
  4. Tran HN, Pham VV, Vo DN, Nguyen-Tri P
    Chemosphere, 2019 Oct;233:988-990.
    PMID: 30853115 DOI: 10.1016/j.chemosphere.2019.02.084
    This article aims to discuss (1) the incorrect identification of Cr(III) and Cr(VI) binding energies in the Cr 2p XPS (X-ray photoelectron spectroscopy) spectra of the laden adsorbent (the nZVI-BC sample after Cr(VI) adsorption), (2) misconception regarding the Weber-Morris intraparticle diffusion model, and (3) inconsistency between the experiential data and the Thomas adsorption rate constants. The authors hope that our comments are beneficial for other researchers to avoid the undesirable mistakes.
    Matched MeSH terms: Biophysical Phenomena
  5. Thevendran R, Navien TN, Meng X, Wen K, Lin Q, Sarah S, et al.
    Anal Biochem, 2020 07 01;600:113742.
    PMID: 32315616 DOI: 10.1016/j.ab.2020.113742
    The performance of aptamers as versatile tools in numerous analytical applications is critically dependent on their high target binding specificity and selectivity. However, only the technical or methodological aspects of measuring aptamer-target binding affinities are focused, ignoring the equally important mathematical components that play pivotal roles in affinity measurements. In this study, we aim to provide a comprehensive review regarding the utilization of different mathematical models and equations, along with a detailed description of the computational steps involved in mathematically deriving the binding affinity of aptamers against their specific target molecules. Mathematical models ranging from one-site binding to multiple aptameric binding site-based models are explained in detail. Models applied in several different approaches of affinity measurements such as thermodynamics and kinetic analysis, including cooperativity and competitive-assay based mathematical models have been elaborately discussed. Mathematical models incorporating factors that could potentially affect affinity measurements are also further scrutinized.
    Matched MeSH terms: Biophysical Phenomena
  6. Thevendran R, Sarah S, Tang TH, Citartan M
    J Control Release, 2020 07 10;323:530-548.
    PMID: 32380206 DOI: 10.1016/j.jconrel.2020.04.051
    Aptamers are a class of folded nucleic acid strands capable of binding to different target molecules with high affinity and selectivity. Over the years, they have gained a substantial amount of interest as promising molecular tools for numerous medical applications, particularly in targeted therapeutics. However, only the different treatment approaches and current developments of aptamer-drug therapies have been discussed so far, ignoring the crucial technical and functional aspects of constructing a therapeutically effective aptamer-driven drug delivery system that translates to improved in-vivo performance. Hence, this paper provides a comprehensive review of the strategies used to improve the therapeutic performance of aptamer-guided delivery systems. We focus on the different functional features such as drug deployment, payload capacity, in-vivo stability and targeting efficiency to further our knowledge in enhancing the cell-specific delivery of aptamer-drug conjugates. Each reported strategy is critically discussed to emphasize both the benefits provided in comparison with other similar techniques and to outline their potential drawbacks with respect to the molecular properties of the aptamers, the drug and the system to be designed. The molecular architecture and design considerations for an efficient aptamer-based delivery system are also briefly elaborated.
    Matched MeSH terms: Biophysical Phenomena
  7. Tan KX, Danquah MK, Sidhu A, Lau SY, Ongkudon CM
    Biotechnol Prog, 2018 01;34(1):249-261.
    PMID: 28699244 DOI: 10.1002/btpr.2524
    Targeted delivery of drug molecules to specific cells in mammalian systems demonstrates a great potential to enhance the efficacy of current pharmaceutical therapies. Conventional strategies for pharmaceutical delivery are often associated with poor therapeutic indices and high systemic cytotoxicity, and this result in poor disease suppression, low surviving rates, and potential contraindication of drug formulation. The emergence of aptamers has elicited new research interests into enhanced targeted drug delivery due to their unique characteristics as targeting elements. Aptamers can be engineered to bind to their cognate cellular targets with high affinity and specificity, and this is important to navigate active drug molecules and deliver sufficient dosage to targeted malignant cells. However, the targeting performance of aptamers can be impacted by several factors including endonuclease-mediated degradation, rapid renal filtration, biochemical complexation, and cell membrane electrostatic repulsion. This has subsequently led to the development of smart aptamer-immobilized biopolymer systems as delivery vehicles for controlled and sustained drug release to specific cells at effective therapeutic dosage and minimal systemic cytotoxicity. This article reports the synthesis and in vitro characterization of a novel multi-layer co-polymeric targeted drug delivery system based on drug-loaded PLGA-Aptamer-PEI (DPAP) formulation with a stage-wise delivery mechanism. A thrombin-specific DNA aptamer was used to develop the DPAP system while Bovine Serum Albumin (BSA) was used as a biopharmaceutical drug in the synthesis process by ultrasonication. Biophysical characterization of the DPAP system showed a spherical shaped particulate formulation with a unimodal particle size distribution of average size ∼0.685 µm and a zeta potential of +0.82 mV. The DPAP formulation showed a high encapsulation efficiency of 89.4 ± 3.6%, a loading capacity of 17.89 ± 0.72 mg BSA protein/100 mg PLGA polymeric particles, low cytotoxicity and a controlled drug release characteristics in 43 days. The results demonstrate a great promise in the development of DPAP formulation for enhanced in vivo cell targeting. © 2017 American Institute of Chemical Engineers Biotechnol. Prog., 34:249-261, 2018.
    Matched MeSH terms: Biophysical Phenomena*
  8. Siddiquee S, Saallah S, Bohari NA, Ringgit G, Roslan J, Naher L, et al.
    Nanomaterials (Basel), 2021 Apr 28;11(5).
    PMID: 33924923 DOI: 10.3390/nano11051142
    The present study reported a facile method for the determination of melamine in milk powder products based on the aggregation of reactant-free 5 nm gold nanoparticles (AuNPs). The strong electrostatic attraction between the positively charged exocyclic amine groups present in the melamine molecule and the negatively charged ions bound to the AuNPs induced aggregation of the AuNPs, resulting in visible color changes that could be seen with the naked eye and monitored by ultraviolet-visible (UV-Vis) absorbance spectra. The method shows high sensitivity with detection limits of 1 × 10-9 M for visual detection and 1 × 10-11 M for UV-Vis analysis, which is far below the safety limit of melamine ingestion in infant formula (1 ppm = 7.9 × 10-6 M) and the detection limit acquired by most AuNP-based melamine detection methods. Good recoveries were obtained over the range of 94.7-95.5% with a relative standard deviation of mean recovery (RSD) ranging from 1.40 to 5.81. The method provides a simple, feasible, fast and real-time detection of melamine adulterants in infant formula by the naked eye, without the aid of advanced instruments.
    Matched MeSH terms: Biophysical Phenomena
  9. Shahimi S, Lamri MF, Abd Mutalib S, Mohd Khalid R, Md Tab M, Khairuddin F
    Food Chem, 2021 Sep 01;355:129586.
    PMID: 33773458 DOI: 10.1016/j.foodchem.2021.129586
    In order to invent a porcine gelatine detection device using microbial resources, bacterial enzymes with a preference towards porcine gelatine and their candidate genes were evaluated. Five (n = 5) bacterial strains isolated from hot spring water and wet clay, Malaysia were screened for their gelatinase activity. The gelatinase enzyme was extracted and purified using ammonium sulphate precipitation prior to performing gelatinase assay on porcine, bovine and fish gelatine medium substrates. The G2 strain or Enterobacter aerogenes (Strain EA1) was selected for whole genome sequenced after showing a consistent trend of preference towards porcine gelatine. The gelatinase candidate gene gelEA1_9 was cloned and expressed. Based on one-way analysis of variance (ANOVA) with POST-HOC Duncan test (α = 0.05), the final product of gelEA1_9 was identified as a novel gelatinase. This gelatinase presented no significant difference in activity towards porcine gelatine. Hence, the present study demonstrated an enzyme-substrate interaction for porcine gelatine identification.
    Matched MeSH terms: Biophysical Phenomena
  10. S. Alrehaili, C. Beddani
    MATEMATIKA, 2019;35(2):271-282.
    MyJurnal
    The commutativity degree is the probability that a pair of elements chosen randomly from a group commute. The concept of commutativity degree has been widely discussed by several authors in many directions. One of the important generalizations of commutativity degree is the probability that a random element from a finite group G fixes a random element from a non-empty set S that we call the action degree of groups. In this research, the concept of action degree is further studied where some inequalities and bounds on the action degree of finite groups are determined. Moreover, a general relation between the action degree of a finite group G and a subgroup H is provided. Next, the action degree for the direct product of two finite groups is determined. Previously, the action degree was only de?ned for ?nite groups, the action degree for ?nitely generated groups will be de?ned in this research and some bounds on them are going to be determined.
    Matched MeSH terms: Biophysical Phenomena
  11. Razidah Ismail
    Scientific Research Journal, 2006;3(1):37-52.
    MyJurnal
    The state space modeling approach was developed to cope with the demand
    and performance due to the increase in system complexity, which may have
    multiple inputs and multiple outputs (MIMO). This approach is based on timedomain
    analysis and synthesis using state variables. This paper describes the
    development of a state space representation of a furnace system of a combined
    cycle power plant. Power plants will need to operate optimally so as to stay
    competitive, as even a small improvement in energy efficiency would involve
    substantial cost savings. Both the quantitative and qualitative analyses of the
    state space representation of the furnace system are discussed. These include
    the responses of systems excited by certain inputs and the structural properties
    of the system. The analysis on the furnace system showed that the system is
    bounded input and bounded output stable, controllable and observable. In
    practice, the state space formulation is very important for numerical computation
    and controller design, and can be extended for time-varying systems.
    Matched MeSH terms: Biophysical Phenomena
  12. Ragheed Hussam, Y., Nurul Bahiyah, A.K.
    MyJurnal
    Neoculin is a sweet protein capable to alter the sour taste into sweet taste, it is 500 times sweeter than the ordinary sugar. This protein has been discovered in Malaysia under the name of Curculin. There are a number of experimental studies that have been conducted on neoculin but none of the studies focuses on molecular level, in order to understand how the protein interacts with the human sweet taste receptors T1R2 and T1R3. Therefore, in this work, a protein-protein docking study was performed between neoculin and the human sweet taste receptor T1R2 and T1R3. The docking results showed residues that might be important for binding the neoculin with the human sweet taste receptors, particularly T1R3 at the amino terminal domain (ATD). In addition, the current results showed that His11, which is important for the taste modifying ability does not bind directly to the human sweet taste receptors.
    Matched MeSH terms: Biophysical Phenomena
  13. Rabha W. Ibrahim, Sayyedah A. Qasem, Zailan Siri
    Sains Malaysiana, 2015;44:295-300.
    This study deals with the presence and distinction of bounded m-solutions (type mild) for a family of generalized integral and differential equations of spot order with fractional resolvent and indefinite delay.
    Matched MeSH terms: Biophysical Phenomena
  14. Oyewusi HA, Huyop F, Wahab RA
    J Biomol Struct Dyn, 2020 Oct 23.
    PMID: 33094694 DOI: 10.1080/07391102.2020.1835727
    The high dependency and surplus use of agrochemical products have liberated enormous quantities of toxic halogenated pollutants into the environment and threaten the well-being of humankind. Herein, this study performed molecular docking, molecular dynamic (MD) simulations, molecular mechanics-Poisson Boltzmann Surface Area (MM-PBSA) calculations on the DehH2 from Bacillus thuringiensis, to identify the order of which the enzyme degrades different substrates, haloacids, haloacetate and chlorpyrifos. The study discovered that the DehH2 favored the degradation of haloacids and haloacetates (-3.3 - 4.6 kcal/mol) and formed three hydrogen bonds with Asp125, Arg201 and Lys202. Despite the inconclusive molecular docking result, chlorpyrifos was consistently shown to be the least favored substrate of the DehH2 in MD simulations and MM-PBSA calculations. Results of MD simulations revealed the DehH2-haloacid- (RMSD 0.15 - 0.25 nm) and DehH2-haloacetates (RMSF 0.05 - 0.25 nm) were more stable, with the DehH2-L-2CP complex being the most stable while the least was the DehH2-chlorpyrifos (RMSD 0.295 nm; RMSF 0.05 - 0.59 nm). The Molecular Mechanics Poisson-Boltzmann Surface Area calculations showed the DehH2-L-2CP complex (-24.27 kcal/mol) having the lowest binding energy followed by DehH2-MCA (-22.78 kcal/mol), DehH2-D-2CP (-21.82 kcal/mol), DehH2-3CP (-21.11 kcal/mol), DehH2-2,2-DCP (-18.34 kcal/mol), DehH2-2,3-DCP (-8.34 kcal/mol), DehH2-TCA (-7.62 kcal/mol), while chlorpyrifos was unable to spontaneously bind to DehH2 (+127.16 kcal/mol). In a nutshell, the findings of this study offer valuable insights into the rational tailoring of the DehH2 for expanding its substrate specificity and catalytic activity in the near future.Communicated by Ramaswamy H. Sarma.
    Matched MeSH terms: Biophysical Phenomena
  15. Nuruzatulifah Bt Asari @ Mansor, Tessonnier JP, Rinaldi A, Reiche S, Kutty M
    Sains Malaysiana, 2012;41:603-609.
    Surface functionalization of multi-walled carbon nanotubes (MWCNTs) was carried out using a gas phase treatment in a Universal Temperature Program (UTP) reactor by flowing SO3 gas onto the CNTs while being heated at different temperatures. The functionalized nanotubes were characterized using X-ray Fluorescence (XRF), Fourier Transform Infrared Spectroscopy (FT-IR) and Raman spectroscopy. The amount of oxyen and sulfur containing groups was determined by acid-base titration. The titration results were in good agreement with elemental analysis using x-ray fluorescence. FTIRanalysis showed the presence of oxygen and sulfur containing groups, S=O, C-S, C=O and -COOH. Raman spectroscopy confirmed that oxygen and sulfur containing acidic groups covalently attached to the sidewall of the MWCNTs.
    Matched MeSH terms: Biophysical Phenomena
  16. Ng IS, Tang MSY, Show PL, Chiou ZM, Tsai JC, Chang YK
    Int J Biol Macromol, 2019 Jul 01;132:615-628.
    PMID: 30940588 DOI: 10.1016/j.ijbiomac.2019.03.235
    In this work, a chitosan-modified nanofiber membrane was fabricated and used to examine the permeation characteristics of C-phycocyanin (CPC) obtained from Spirulina platensis. The effects of NaCl concentration (0.1-1.0 M), chitosan coupling pH (6-8), chitosan coupling concentration (0.1-3.0%), algal solution pH (6-8), algal mass concentration (0.1-1.0% dw/v), and membrane flux (4.08 × 10-2-2.04 × 10-1 mL/min·cm2) on the penetration performance of the membrane for CPC were investigated. The results show that the order of binding selectivity of the membrane for these proteins is contaminating proteins (TP) > allophycocyanin (APC) > CPC. TP and APC molecules were more easily adsorbed by the chitosan-modified membrane, and the CPC molecules most easily penetrated the membrane without being adsorbed, enhancing CPC purity. The purification factor and total mass flux were 3.3 fold and 66%, respectively, in a single step.
    Matched MeSH terms: Biophysical Phenomena
  17. Nadiveedhi MR, Nuthalapati P, Gundluru M, Yanamula MR, Kallimakula SV, Pasupuleti VR, et al.
    ACS Omega, 2021 Feb 02;6(4):2934-2948.
    PMID: 33553912 DOI: 10.1021/acsomega.0c05302
    A series of novel α-furfuryl-2-alkylaminophosphonates have been efficiently synthesized from the one-pot three-component classical Kabachnik-Fields reaction in a green chemical approach by addition of an in situ generated dialkylphosphite to Schiff's base of aldehydes and amines by using environmental and eco-friendly silica gel supported iodine as a catalyst by microwave irradiation. The advantage of this protocol is simplicity in experimental procedures and products were resulted in high isolated yields. The synthesized α-furfuryl-2-alkylaminophosphonates were screened to in vitro antioxidant and plant growth regulatory activities and some are found to be potent with antioxidant and plant growth regulatory activities. These in vitro studies have been further supported by ADMET (absorption, distribution, metabolism, excretion, and toxicity), quantitative structure-activity relationship, molecular docking, and bioactivity studies and identified that they were potentially bound to the GLN340 amino acid residue in chain C of 1DNU protein and TYR597 amino acid residue in chain A of 4M7E protein, causing potential exhibition of antioxidant and plant growth regulatory activities. Eventually, title compounds are identified as good blood-brain barrier (BBB)-penetrable compounds and are considered as proficient central nervous system active and neuroprotective antioxidant agents as the neuroprotective property is determined with BBB penetration thresholds.
    Matched MeSH terms: Biophysical Phenomena
  18. Muhammad Danial Abu Hasan, Zair Asrar Ahmad, Mohd Salman Leong, Lim, Meng Hee
    MyJurnal
    This paper presents parameters analysis for the estimated modal damping ratio using a new version of the automated enhanced frequency domain decomposition (AEFDD). The purpose of this study is to provide a better choice of a maximum number of points of time segments and modal assurance criterion (MAC) index number regarding to the variable level of system damping (low and high damped structure) and degree of freedom of the system. According current literature, frequency domain (FD) methods seem to have the problem with providing a correct identification of the modal damping ratio, since the correct estimate of modal damping is still an open problem and often leads to biased estimates. This technique is capable of providing consistent modal parameters estimation, particularly for modal frequencies and mode shapes. As a necessary fundamental condition, the algorithm has been assessed first from computed numerical responses according to random white noise, acting on different shear-type frame structures and corrupted with noise. Results indicate that reducing the value of natural frequencies and modal damping ratios of the modes under analysis demands longer time segments and a high value of the maximum number of points for adequate information on the decaying correlation functions when computing a modal damping ratio. In addition, the results also prove that the MAC index does not significantly affect the results for the low damped system. However, the use of a high MAC index value for the high damped system significantly introduces large error bound and it becomes worse, particularly for the higher modes, as the standard deviation of percentage error increases gradually. Furthermore, the use of a MAC index for a high number of points of time segments significantly increases the standard deviation of the percentage error.
    Matched MeSH terms: Biophysical Phenomena
  19. Mohamad R, Awang N, Jotani MM, Tiekink ER
    Acta Crystallogr E Crystallogr Commun, 2016 Aug 1;72(Pt 8):1130-7.
    PMID: 27536397 DOI: 10.1107/S2056989016011385
    The crystal and mol-ecular structures of two di-phenyl-tin bis-(di-thio-carbamate)s, [Sn(C6H5)2(C5H10NOS2)2], (I), and [Sn(C6H5)2(C7H14NO2S2)2], (II), are described. In (I), in which the metal atom lies on a twofold rotation axis, the di-thio-carbamate ligand coordinates with approximately equal Sn-S bond lengths and the ipso-C atoms of the Sn-bound phenyl groups occupy cis-positions in the resulting octa-hedral C2S4 donor set. A quite distinct coordination geometry is noted in (II), arising as a result of quite disparate Sn-S bond lengths. Here, the four S-donors define a trapezoidal plane with the ipso-C atoms lying over the weaker of the Sn-S bonds so that the C2S4 donor set defines a skewed trapezoidal bipyramid. The packing of (I) features supra-molecular layers in the ab plane sustained by methyl-ene-C-H⋯π(Sn-ar-yl) inter-actions; these stack along the c-axis direction with no specific inter-actions between them. In (II), supra-molecular chains along the b-axis direction are formed by methyl-ene-C-O(ether) inter-actions; these pack with no directional inter-actions between them. A Hirshfeld surface analysis was conducted on both (I) and (II) and revealed the dominance of H⋯H inter-actions contributing to the respective surfaces, i.e. >60% in each case, and other features consistent with the description of the mol-ecular packing above.
    Matched MeSH terms: Biophysical Phenomena
  20. Ling I, Kumari H, Mirzamani M, Sobolev AN, Garvey CJ, Atwood JL, et al.
    Chem Commun (Camb), 2018 Sep 25;54(77):10824-10827.
    PMID: 30140821 DOI: 10.1039/c8cc05650a
    We report on the assembly of three-fold axially compressed icosahedral arrays of the bowl shaped p-sulfonatocalix[4]arene molecules in the solid-state, intricately bound to dipicolinate and yttrium(iii) ions, with the compression reflected in Hirshfeld surface analyses. Solution studies show dissolution of the icosahedra intact, but with a geometrical rearrangement to regular icosahedra.
    Matched MeSH terms: Biophysical Phenomena
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