Displaying publications 61 - 80 of 830 in total

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  1. Fatal Leptospirosis and Escherichia coli co-infection in a post-partum woman
    Tan TL, Lee LY, Lim WC
    Med J Malaysia, 2018 12;73(6):427-429.
    PMID: 30647223
    The occurrence of Leptospirosis and Escherichia coli coinfection in the post-partum period is a novel case. This report illustrated a previously well woman from a suburban area presented with acute neurological deterioration following a two days history of fever during her puerperal period. Early interventions with fluids, broad spectrum antibiotics and intensive supportive care were given. Despite that, she deteriorated rapidly and developed pulmonary hemorrhage, disseminated intravascular coagulopathy, and multi-organ failure. She succumbed within 12 hours of admission. The knowledge about such fatal co-infections should be disseminated to medical practitioners encountering Leptospirosis infection and general public.
    Matched MeSH terms: Escherichia coli; Escherichia coli Infections/complications*; Escherichia coli Infections/microbiology
  2. Fulltext Survivability of Salmonella and shiga-toxigenic Escherichia coli (STEC) O157 in microwave heated ready-to-eat (RTE) foods
    New, C.Y., Abdul Rahman, R., Son, R., Mohammed, A.S.
    Food Research, 2018;2(4):378-390.
    MyJurnal
    The safety level of microwaved foods remains at vague as this subject was less addressed
    scientifically. A study was initiated to address the matter by investigating on the
    survivability of Salmonella and Shiga-toxigenic Escherichia coli (STEC) O157 in
    microwave heated ready-to-eat (RTE) foods using the Most Probable Number coupled
    Polymerase Chain Reaction (MPN-PCR) technique. A total of 329 samples of various
    ready-to-eat (RTE) convenience meals were collected around Wilayah Persekutuan Kuala
    Lumpur and Selangor regions. Salmonella was positively identified in 66 samples (20.1%,
    Matched MeSH terms: Shiga-Toxigenic Escherichia coli
  3. Haid daripada perspektif sains dan Maqasid Syariah
    Nur Asmadayana Hasim, Mohd Izhar Ariff Mohd Kashim, Mohammad Zaini Yahaya, Muhammad Adib Samsudin, Rozida Khalid, Rizafizah Othaman
    Sains Malaysiana, 2016;45:1879-1885.
    Setiap kejadian semula jadi merupakan rahmat dan memberi kemaslahatan kepada manusia termasuklah pendarahan haid dalam kalangan wanita. Haid merupakan suatu proses yang unik dan terancang yang melibatkan tiga fasa utama iaitu fasa haid, fasa folikel dan fasa luteal. Objektif penyelidikan ini ialah untuk mengkaji dan menghubungkaitkan kebaikan haid daripada perspektif sains dan maqasid syariah. Kajian ini dijalankan dengan menggunakan ulasan literatur secara deskriptif. Kajian mendapati bahawa perubahan hormon, warna darah dan faktor fiziokimia lain memberi kesan terhadap kenormalan kitaran haid. Darah haid juga dikenal pasti mempunyai agen antimikrob terutamanya terhadap bakteria E. coli dan bakteria Gram-negatif lain. Hal ini bertepatan dengan maqasid syariah memelihara jiwa kerana haid mampu juga memelihara kesihatan wanita. Selain itu, kajian lepas menemukan bahawa darah haid terdiri daripada sel stem yang boleh digunakan dalam aktiviti klinikal pada masa akan datang. Maqasid syariah melindungi keturunan juga dapat dilihat dengan kehadiran haid yang sering digunakan bagi menjangkakan waktu subur bagi merancang kehamilan. Hikmah Islam melarang mendekatkan diri (bersetubuh) dengan wanita yang sedang haid adalah satu rahmat yang besar, kerana wanita yang sedang haid biasanya mempunyai kelaziman gejala prahaid (PMS) yang melibatkan isu kesihatan. Oleh itu, haid daripada perspektif sains adalah bertepatan dengan maqasid syariah.
    Matched MeSH terms: Escherichia coli
  4. Kawasan tadahan utara Putrajaya, Malaysia-cabaran pengurusan kualiti air Putrajaya, Malaysia
    Mohd Zamri B. Daud, Pereira JJ, Mazlin B. Mokhtar
    Sains Malaysiana, 2011;40:1179-1186.
    Kawasan Pentadbiran Putrajaya merangkumi 70% daripada kawasan tadahan Tasik Putrajaya. Kerja-kerja pembangunan yang dijalankan di dalam kawasan Putrajaya kebiasaannya dapat dikawal dengan merujuk kepada peraturan-peraturan dan garis panduan yang telah disediakan oleh pihak Perbadanan Putrajaya dalam memastikan kualiti air Tasik dan Tanah Bencah Putrajaya sentiasa mematuhi piawaian yang telah ditetapkan. Seluas 30% daripada kawasan tadahan Tasik dan Tanah Bencah Putrajaya terletak di luar pentadbiran dan kawalan pihak berkuasa Putrajaya. Kawasan tadahan Utara Putrajaya adalah kawasan tadahan yang luas yang menyumbang sebahagian besar air yang memasuki kawasan Tasik dan Tanah Bencah Putrajaya. Berasal dari anak Sg. Chuau kini ia telah membentuk satu kawasan tasik dan tanah bencah tersebut. Data kualiti air yang dilakukan oleh pihak berkuasa Putrajaya iaitu Perbadanan Putrajaya dari tahun 2002 sehingga 2005 dianalisis bagi mengenalpasti masalah utama kualiti air dari kawasan Tadahan Utara Tanah Bencah Putrajaya. Data kualiti air yang dicatat sepanjang tahun 2002 mendapati purata peratusan parameter yang melebihi standard Putrajaya bagi ammoniakal nitrogen (NH3-N) ialah 43.7%, E. coli 31.3%, TSS 12.5% manakala DO dan COD masing-masing 6.2%. Untuk sepanjang tahun 2003, purata peratusan parameter bagi NH3-N ialah 23.7%, E. coli 18.4%, jumlah koliform 18.4%, TSS 2.6%, DO 13.2%, COD 13.2%, dan BOD 10.5%. Untuk sepanjang tahun 2004, purata peratusan parameter bagi NH3-N ialah 35.5%, E. coli 22.6%, jumlah koliform 12.9%, TSS 9.7%, COD 3.2%, dan BOD 16.1%. Untuk tahun 2005, purata peratusan parameter bagi E. coli 36.4%, NH3-N ialah 22.7%, jumlah koliform 18.2%, BOD 13.6%, DO 4.5%, dan COD juga 4.5%. Secara keseluruhan, analisis bagi tempoh empat tahun ini mendapati parameter NH3-N dan E. coli sering kali menunjuk bacaan yang tidak mematuhi Piawaian Putrajaya. Punca utama masalah kualiti air di kawasan Tadahan Utara Tanah Bencah Putrajaya adalah kegagalan mengurus kawasan tadahan secara bersepadu dan sikap pihak berkepentingan di kawasan kajian tidak mengurus dan mengawal secara menyeluruh masalah air larian, kawasan terbuka dan kelodakan ketika membangunkan kawasan.
    Matched MeSH terms: Escherichia coli
  5. Sejauh manakah kanak-kanak menjadi pembawa asimptomatik patogen enterik
    Salaswati H, Md Yunus A, Osman A, Zauyah Y, Yusuf S, Abd Razak AR, et al.
    Family Physician, 1990;2:39-41.
    Stool samples obtained from 120 Malay children, aged below 6 years, in Mukim Ijok, Kuala Selangor, were tested. Enteric pathogens were found in 7.5% of specimens. Enteropathogenic Escherichia coli (EPEC) was the most common enteric pathogen isolated (6.7%) followed by Salmonella spp (0.83%). The rate of isolation was independent of age and sex.
    Matched MeSH terms: Escherichia coli
  6. Fulltext Thermodynamics of semi-specific ligand recognition: the binding of dipeptides to the E.coli dipeptide binding protein DppA
    Zainol MKM, Linforth RJC, Winzor DJ, Scott DJ
    Eur Biophys J, 2021 Dec;50(8):1103-1110.
    PMID: 34611772 DOI: 10.1007/s00249-021-01572-y
    This investigation of the temperature dependence of DppA interactions with a subset of three dipeptides (AA. AF and FA) by isothermal titration calorimetry has revealed the negative heat capacity ([Formula: see text]) that is a characteristic of hydrophobic interactions. The observation of enthalpy-entropy compensation is interpreted in terms of the increased structuring of water molecules trapped in a hydrophobic environment, the enthalpic energy gain from which is automatically countered by the entropy decrease associated with consequent loss of water structure flexibility. Specificity for dipeptides stems from appropriate spacing of designated DppA aspartate and arginine residues for electrostatic interaction with the terminal amino and carboxyl groups of a dipeptide, after which the binding pocket closes to become completely isolated from the aqueous environment. Any differences in chemical reactivity of the dipeptide sidechains are thereby modulated by their occurrence in a hydrophobic environment where changes in the structural state of entrapped water molecules give rise to the phenomenon of enthalpy-entropy compensation. The consequent minimization of differences in the value of ΔG0 for all DppA-dipeptide interactions thus provides thermodynamic insight into the biological role of DppA as a transporter of all dipeptides across the periplasmic membrane.
    Matched MeSH terms: Escherichia coli/metabolism; Escherichia coli Proteins*
  7. Assessment of antibiofilm activity of magnesium fluoride nanoparticles-stabilized oil-in-water nanosized emulsion
    Shunmugaperumal T, Ramamurthy S
    Drug Dev Ind Pharm, 2012 Mar 12.
    PMID: 22409156 DOI: 10.3109/03639045.2012.665459
    Magnesium fluoride (MgF(2)) nanoparticles-stabilized oil-in-water nanosized emulsion was prepared and assessed for its antiadherent and antibiofilm activities over glass coupons against pathogenic microorganisms like Escherichia coli and Staphylococcus aureus.
    Matched MeSH terms: Escherichia coli
  8. Fulltext Whole-Genome Sequence of Endophytic Plant Growth-Promoting Escherichia coli USML2
    Tharek M, Sim KS, Khairuddin D, Ghazali AH, Najimudin N
    Genome Announc, 2017 May 11;5(19).
    PMID: 28495774 DOI: 10.1128/genomeA.00305-17
    Escherichia coli strain USML2 was originally isolated from the inner leaf tissues of surface-sterilized phytopathogenic-free oil palm (Elaeis guineensis Jacq.). We present here the whole-genome sequence of this plant-endophytic strain. The genome consists of a single circular chromosome of 4,502,758 bp, 4,315 predicted coding sequences, and a G+C content of 50.8%.
    Matched MeSH terms: Escherichia coli
  9. Fulltext Colonisation factors amongst clinical isolates of enterotoxigenic Escherichia coli
    Iyer L, Vadivelu J, Parasakthi N
    Singapore Med J, 1995 Oct;36(5):495-7.
    PMID: 8882532
    The production of heat-labile (LT) and heat-stable (ST) enterotoxins, colonisation factor antigens (CFAs) and haemagglutinins was investigated amongst 310 Escherichia coli (E. coli) isolates obtained from 62 children under the age of five, with diarrhoea. Twenty-one isolates were found to produce enterotoxins, of which fifteen (71%) isolates produced ST only, 2 (10%) produced LT only and 4 (19%) produced both LT and ST. However, none of the isolates demonstrated any of the common CFAs identified to date, but 8 out of the 21 isolates demonstrated haemagglutination with rabbit, sheep or human group A erythrocytes, suggesting the presence of putative CFAs, yet unidentified.
    Matched MeSH terms: Escherichia coli/isolation & purification*; Escherichia coli Infections/immunology*
  10. Biochemical and in silico structural characterization of a cold-active arginase from the psychrophilic yeast, Glaciozyma antarctica PI12
    Yusof NY, Quay DHX, Kamaruddin S, Jonet MA, Md Illias R, Mahadi NM, et al.
    Extremophiles, 2024 Feb 01;28(1):15.
    PMID: 38300354 DOI: 10.1007/s00792-024-01333-7
    Glaciozyma antarctica PI12 is a psychrophilic yeast isolated from Antarctica. In this work, we describe the heterologous production, biochemical properties and in silico structure analysis of an arginase from this yeast (GaArg). GaArg is a metalloenzyme that catalyses the hydrolysis of L-arginine to L-ornithine and urea. The cDNA of GaArg was reversed transcribed, cloned, expressed and purified as a recombinant protein in Escherichia coli. The purified protein was active against L-arginine as its substrate in a reaction at 20 °C, pH 9. At 10-35 °C and pH 7-9, the catalytic activity of the protein was still present around 50%. Mn2+, Ni2+, Co2+ and K+ were able to enhance the enzyme activity more than two-fold, while GaArg is most sensitive to SDS, EDTA and DTT. The predicted structure model of GaArg showed a very similar overall fold with other known arginases. GaArg possesses predominantly smaller and uncharged amino acids, fewer salt bridges, hydrogen bonds and hydrophobic interactions compared to the other counterparts. GaArg is the first reported arginase that is cold-active, facilitated by unique structural characteristics for its adaptation of catalytic functions at low-temperature environments. The structure and function of cold-active GaArg provide insights into the potentiality of new applications in various biotechnology and pharmaceutical industries.
    Matched MeSH terms: Escherichia coli
  11. Secretory expression of thermostable T1 lipase through bacteriocin release protein
    Rahman RN, Leow TC, Basri M, Salleh AB
    Protein Expr Purif, 2005 Apr;40(2):411-6.
    PMID: 15766884
    The extracellular production of T1 lipase was performed by co-expression of pJL3 vector encoding bacteriocin release protein in prokaryotic system. Secretory expression was optimized by considering several parameters, including host strains, inducer (IPTG) concentration, media, induction at A(600 nm), temperature, and time of induction. Among the host strains tested, Origami B excreted out 18,100 U/ml of lipase activity into culture medium when induced with 50 microM IPTG for 12 h. The Origami B harboring recombinant plasmid pGEX/T1S and pJL3 vector was chosen for further study. IPTG at 0.05 mM, YT medium, induction at A(600 nm) of 1.25, 30 degrees C, and 32 h of induction time were best condition for T1 lipase secretion with Origami B as a host.
    Matched MeSH terms: Escherichia coli/genetics; Escherichia coli Proteins/genetics*
  12. Fulltext Antimicrobial Susceptibility of Klebsiella pneumoniae and Escherichia coli with Extended-Spectrum β-lactamase associated Genes in Hospital Tengku Ampuan Afzan, Kuantan, Pahang
    Mahdi Yahya Mohsen S, Hamzah HA, Muhammad Imad Al-Deen M, Baharudin R
    Malays J Med Sci, 2016 Mar;23(2):14-20.
    PMID: 27547110 MyJurnal
    To assess antimicrobial susceptibility of extended-spectrum β-lactamase- (ESBL-) producing Klebsiella pneumoniae and Escherichia coli isolates from Hospital Tengku Ampuan Afzan (HTAA), as well as to identify ESBL genes.
    Matched MeSH terms: Escherichia coli
  13. Antibiotic resistance, plasmid profile and RAPD-PCR analysis of enteropathogenic Escherichia coli (EPEC) clinical isolates
    Wan KF, Radu S, Cheah YK, Benjamin PG, Ling CM, Hon SF, et al.
    Southeast Asian J. Trop. Med. Public Health, 2003 Sep;34(3):620-6.
    PMID: 15115139
    Enteropathogenic Escherichia coli (EPEC) is a leading cause of diarrhea among infants in developing countries. A total of 38 EPEC isolates, obtained from diarrhea patients of Hospital Miri, Sarawak, were investigated through plasmid profile, antibiotic resistance and randomly amplified polymorphic DNA (RAPD) analysis. From the 8 types of antibiotics used, all isolates were 100% resistant to furoxime, cephalothin and sulphamethoxazole and showed high multiple antibiotic resistant (MAR) indexes, ranging from 0.5 to 1.0. In plasmid profiling, 22 isolates (58%) showed the presence of one or more plasmids in the range 1.0 to 30.9 mDa. The dendrogram obtained from the results of the RAPD-PCR discriminated the isolates into 30 single isolates and 3 clusters at the level of 40% similarity. The EPEC isolates were highly diverse, as shown by their differing plasmid profiles, antibiotic resistance patterns and RAPD profiles.
    Matched MeSH terms: Escherichia coli/classification*; Escherichia coli/drug effects; Escherichia coli/genetics; Escherichia coli Infections/microbiology*; Escherichia coli Infections/epidemiology
  14. Fulltext Risk factors and spatial distribution of extended spectrum β-lactamase-producing- Escherichia coli at retail poultry meat markets in Malaysia: a cross-sectional study
    Aliyu AB, Saleha AA, Jalila A, Zunita Z
    BMC Public Health, 2016 08 02;16:699.
    PMID: 27484086 DOI: 10.1186/s12889-016-3377-2
    BACKGROUND: The significant role of retail poultry meat as an important exposure pathway for the acquisition and transmission of extended spectrum β-lactamase-producing Escherichia coli (ESBL-EC) into the human population warrants understanding concerning those operational practices associated with dissemination of ESBL-EC in poultry meat retailing. Hence, the objective of this study was to determine the prevalence, spatial distribution and potential risk factors associated with the dissemination of ESBL-EC in poultry meat retail at wet-markets in Selangor, Malaysia.

    METHODS: Poultry meat (breast, wing, thigh, and keel) as well as the contact surfaces of weighing scales and cutting boards were sampled to detect ESBL-EC by using culture and disk combination methods and polymerase chain reaction assays. Besides, questionnaire was used to obtain data and information pertaining to those operational practices that may possibly explain the occurrence of ESBL-EC. The data were analysed using logistic regression analysis at 95 % CI.

    RESULTS: The overall prevalence of ESBL-EC was 48.8 % (95 % CI, 42 - 55 %). Among the risk factors that were explored, type of countertop, sanitation of the stall environment, source of cleaning water, and type of cutting board were found to be significantly associated with the presence of ESBL-EC.

    CONCLUSIONS: Thus, in order to prevent or reduce the presence of ESBL-EC and other contaminants at the retail-outlet, there is a need to design a process control system based on the current prevailing practices in order to reduce cross contamination, as well as to improve food safety and consumer health.

    Matched MeSH terms: Escherichia coli/genetics; Escherichia coli/growth & development*; Escherichia coli/metabolism; Escherichia coli Infections/etiology; Escherichia coli Infections/microbiology*
  15. Fulltext Evaluation of PAIusp subtyping to characterize uropathogenic E. coli isolates
    Lai YM, Zaw MT, Shamsudin SB, Lin Z
    J Infect Dev Ctries, 2016 Oct 31;10(10):1053-1058.
    PMID: 27801366 DOI: 10.3855/jidc.6944
    INTRODUCTION: Uropathogenic virulence factors have been identified by comparing the prevalence of these among urinary tract isolates and environmental strains. The uropathogenic-specific protein (USP) gene is present on the pathogenicity island (PAI) of uropathogenic Escherichia coli (UPEC) and, depending on its two diverse gene types and the sequential patterns of three open reading frame units (orfUs) following it, there is a method to characterize UPEC epidemiologically called PAIusp subtyping.
    METHODOLOGY: A total of 162 UPEC isolates from Sabah, Malaysia, were tested for the presence of the usp gene and the sequential patterns of three orfUs following it using polymerase chain reaction (PCR). In addition, by means of triplex PCR, the prevalence of the usp gene was compared with other two VFs of UPEC, namely alpha hemolysin (α-hly) and cytotoxic necrotizing factor (cnf-1) genes encoding two toxins.
    RESULTS: The results showed that the usp gene was found in 78.40% of UPEC isolates, indicating that its prevalence was comparable to that found in a previous study in Japan. The two or three orfUs were also associated with the usp gene in this study. All the PAIusp subtypes observed in Japan were present in this study, while subtype IIa was the most common in both studies. The usp gene was observed in a higher percentage of isolates when compared with α-hly and cnf-1 genes.
    CONCLUSIONS: The findings in Japan and Sabah, East Malaysia, were similar, indicating that PAIusp subtyping is applicable to the characterization of UPEC strains epidemiologically elsewhere in the world.
    Matched MeSH terms: Escherichia coli Infections/microbiology; Escherichia coli Proteins/genetics*; Uropathogenic Escherichia coli/classification*; Uropathogenic Escherichia coli/genetics*
  16. Enteropathogenic Escherichia coli diarrhoea in Malaysian children
    Jegathesan M, Singh RB, Kanaganayagy M, Soon LE
    Southeast Asian J. Trop. Med. Public Health, 1975 Mar;6(1):61-7.
    PMID: 1096307
    Matched MeSH terms: Escherichia coli/drug effects; Escherichia coli/isolation & purification*; Escherichia coli/pathogenicity; Escherichia coli Infections/microbiology*; Escherichia coli Infections/epidemiology
  17. SHV-5 extended-spectrum beta-lactamases in clinical isolates of Escherichia coli in Malaysia
    Subramaniam G, Palasubramaniam S, Navaratnam P
    Indian J Med Microbiol, 2006 Jul;24(3):205-7.
    PMID: 16912441
    Escherichia coli isolates resistant to ceftazidime isolated in the University Malaya Medical Center (UMMC) Kuala Lumpur, Malaysia, between the years 1998 and 2000 were studied for extended-spectrum beta-lactamase (ESBL) production. All strains were analysed phenotypically and genotypically and found to be ESBL-producing organisms harbouring SHV-5 beta-lactamase. This was confirmed by PCR-SSCP and nucleotide sequencing of the blaSHV amplified gene. As there was no evidence of ESBL activity in E. coli prior to this, coupled with the fact that there was a predominance of SHV-5 beta-lactamases in Klebsiella pneumoniae isolates in UMMC, we postulate that the E. coli obtained the SHV-5 beta-lactamase genes by plasmid transfer from the ESBL-producing K. pneumoniae.
    Matched MeSH terms: Escherichia coli/drug effects; Escherichia coli/enzymology*; Escherichia coli/genetics; Escherichia coli/isolation & purification*; Escherichia coli Infections/microbiology*
  18. Fulltext Detection and characterization of ESBL-producing Enterobacteriaceae from the gut of healthy chickens, Gallus gallus domesticus in rural Nepal: Dominance of CTX-M-15-non-ST131 Escherichia coli clones
    Hosuru Subramanya S, Bairy I, Nayak N, Amberpet R, Padukone S, Metok Y, et al.
    PLoS One, 2020;15(5):e0227725.
    PMID: 32469888 DOI: 10.1371/journal.pone.0227725
    The surge in the prevalence of drug-resistant bacteria in poultry is a global concern as it may pose an extended threat to humans and animal health. The present study aimed to investigate the colonization proportion of extended-spectrum β-lactamase (ESBL) and carbapenemase-producing Enterobacteriaceae (EPE and CPE, respectively) in the gut of healthy poultry, Gallus gallus domesticus in Kaski district of Western Nepal. Total, 113 pooled rectal swab specimens from 66 private household farms and 47 commercial poultry farms were collected by systematic random sampling from the Kaski district in western Nepal. Out of 113 pooled samples, 19 (28.8%) samples from 66 backyard farms, and 15 (31.9%) from 47 commercial broiler farms were positive for EPE. Of the 38 EPE strains isolated from 34 ESBL positive rectal swabs, 31(81.6%) were identified as Escherichia coli, five as Klebsiella pneumoniae (13.2%), and one each isolate of Enterobacter species and Citrobacter species (2.6%). Based on genotyping, 35/38 examined EPE strains (92.1%) were phylogroup-1 positive, and all these 35 strains (100%) had the CTX-M-15 gene and strains from phylogroup-2, and 9 were of CTX-M-2 and CTX-M-14, respectively. Among 38 ESBL positive isolates, 9 (23.7%) were Ambler class C (Amp C) co-producers, predominant were of DHA, followed by CIT genes. Two (6.5%) E. coli strains of ST131 belonged to clade C, rest 29/31 (93.5%) were non-ST131 E. coli. None of the isolates produced carbapenemase. Twenty isolates (52.6%) were in-vitro biofilm producers. Univariate analysis showed that the odd of ESBL carriage among commercial broilers were 1.160 times (95% CI 0.515, 2.613) higher than organically fed backyard flocks. This is the first study in Nepal, demonstrating the EPE colonization proportion, genotypes, and prevalence of high-risk clone E. coli ST131 among gut flora of healthy poultry. Our data indicated that CTX-M-15 was the most prevalent ESBL enzyme, mainly associated with E. coli belonging to non-ST131clones and the absence of carbapenemases.
    Matched MeSH terms: Escherichia coli/enzymology; Escherichia coli/pathogenicity; Escherichia coli Infections/drug therapy*; Escherichia coli Infections/genetics; Escherichia coli Infections/microbiology
  19. Fulltext The dnd operon for DNA phosphorothioation modification system in Escherichia coli is located in diverse genomic islands
    Ho WS, Ou HY, Yeo CC, Thong KL
    BMC Genomics, 2015;16:199.
    PMID: 25879448 DOI: 10.1186/s12864-015-1421-8
    Strains of Escherichia coli that are non-typeable by pulsed-field gel electrophoresis (PFGE) due to in-gel degradation can influence their molecular epidemiological data. The DNA degradation phenotype (Dnd(+)) is mediated by the dnd operon that encode enzymes catalyzing the phosphorothioation of DNA, rendering the modified DNA susceptible to oxidative cleavage during a PFGE run. In this study, a PCR assay was developed to detect the presence of the dnd operon in Dnd(+) E. coli strains and to improve their typeability. Investigations into the genetic environments of the dnd operon in various E. coli strains led to the discovery that the dnd operon is harboured in various diverse genomic islands.
    Matched MeSH terms: Escherichia coli/genetics*; Escherichia coli Proteins/classification; Escherichia coli Proteins/genetics*
  20. Fulltext Comparison of methods in the detection of enterotoxigenic Escherichia coli in a Malaysian laboratory
    Cheong YM, Jegathesan M, Ansary A, Othman M
    Med J Malaysia, 1990 Mar;45(1):42-8.
    PMID: 2152068
    The prevalence of Enterotoxigenic Escherichia coli (ETEC) in 433 stool samples from diarrhoeal cases of all ages was studied using two commercially available test kits for the detection of heat labile toxin (LT) and the infant mouse assay for the heat stable toxin (ST). 16 samples (3.7%) were positive for ETEC, of which nine were producing ST alone, six LT alone and only one was producing both LT and ST. Although the percentage of isolation rate was low, its occurrence was almost as common as the Shigella spp and Salmonella spp in the same study. Of the two test kits examined, the Phadebact ETEC-LT Test 50 (Pharmacia Diagnostics, Uppsala, Sweden) was found to be more suitable for use in a routine diagnostic laboratory. Ten out of 12 (83%) of the strains tested were resistant to one or more antibiotics.
    Matched MeSH terms: Escherichia coli/isolation & purification*; Escherichia coli/metabolism; Escherichia coli Proteins*
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