Tropical peat swamp forests are important and endangered ecosystems, although little is known of their microbial diversity and ecology. We used molecular and enzymatic techniques to examine patterns in prokaryotic community structure and overall microbial activity at 0-, 10-, 20-, and 50-cm depths in sediments in a peat swamp forest in Malaysia. Denaturing gradient gel electrophoresis profiles of amplified 16S ribosomal ribonucleic acid (rRNA) gene fragments showed that different depths harbored different bacterial assemblages and that Archaea appeared to be limited to the deeper samples. Cloning and sequencing of longer 16S rRNA gene fragments suggested reduced microbial diversity in the deeper samples compared to the surface. Bacterial clone libraries were largely dominated by ribotypes affiliated with the Acidobacteria, which accounted for at least 27-54% of the sequences obtained. All of the sequenced representatives from the archaeal clone libraries were Crenarchaeota. Activities of microbial extracellular enzymes involved in carbon, nitrogen, and phosphorus cycling declined appreciably with depth, the only exception being peroxidase. These results show that tropical peat swamp forests are unusual systems with microbial assemblages dominated by members of the Acidobacteria and Crenarchaeota. Microbial communities show clear changes with depth, and most microbial activity is likely confined to populations in the upper few centimeters, the site of new leaf litter fall, rather than the deeper, older, peat layers.
The commonly adopted method of dumping dredge spoil at sea using split-hull barges leads to considerable sediment loss to the water column and a subsequent dispersion of fine material that can pose a risk to sensitive "downstream" habitats such as coral reefs. Containing sediment loads using stitched closed geotextile bags is practiced for minimizing loss of contaminated sediment, but is expensive in terms of operational efficiency. Following promising observations from initial laboratory trials, the plunging of partially shielded sediment loads, released on open sea, was studied. The partial shielding was achieved with rigid, open containers as well as flexible, open bags. The loss of sediment from these modes of shielding was measured, and it was observed that even limited and unstitched shielding can be effective in debilitating the entrainment of water into the descending load. In particular, long-sleeved flexible bags practically self-eliminated the exposure of the load and thus losses.
Miocene larger benthic foraminifera have been discovered from a limestone unit of the Kalumpang Formation. The limestone is exposed at the Teck Guan Quarry, Tawau, southeast Sabah. The Kalumpang Formation consists predominantly of interbedded mudstone and sandstone (graywacke), conglomerate, limestone, marl, chert and volcanic rocks. Five limestone samples have been collected and processed for petrographic analysis and identification of larger benthic foraminifera. The limestone is classified as packstone and mudstone. A total of seventeen species of larger benthic foraminifera have been identified. The foraminifera are divided into two assemblages namely Assemblage I and Assemblage II. Assemblage I is characterized by the presence of Lepidocyclina (Nephrolepidina) parva, Operculina sp. and Lepidocyclina (Eulepidina) formosa. This assemblage is an indicative of Aquitanian to Burdigalian in age (Early Miocene). Assembalge II comprises of Lepidocyclina (Nephrolepidina) sumatrensis, Lepidocyclina (Nephrolepidina) angulosa, Lepidocyclina (Nephrolepidina) ferreroi Lepidocyclina sp., Miogypsina sp., Katacycloclypeus annulatus, Katacyloclypeus martini, Cycloclypeus carpenteri, Cycloclypeus indopacificus, Cycloclypeus sp., Flosculinella bontangensis, Operculina complanata, Amphistegina bowdenensis and Amphistegina sp. This assemblage is an indicative of Langhian to Serravallian age (Middle Miocene). The foraminiferal assemblages suggest that the depositional environment was a warm tropical shallow-marine at the fore-reef shelf zone.
The concentration of four metals: Cd, Ni, Cr, and Sn, in the surface sediment samples from the Langat River were evaluated. Multivariate techniques were used to apportion the sources of the metals. The results showed that the highest concentration of metals in the Langat River were found at Jenjarom station, with the concentration of these metals decreasing in the order of Sn>Cr>Ni>Cd (114.27, 21.03, 7.84, 0.59 μg g(-1) dry weight). The level of pollution in the sediment was assessed using contamination factor (CF), pollution load index (PLI), geo-accumulation index (Igeo), and enrichment factor (EF). The results of the pollution assessment showed that the Langat River sediments have severe enrichment of Sn and moderate to severe enrichment of Cd. The results of the PLI for the Langat River suggest that the sampling stations are not polluted with the exception of the Jugra, Jenjarom, and Jalan Hulu Langat stations.
This study applied the use of sequential extraction technique and simple bioaccessibility extraction test to quantify the bioavailable fractions and the human bioaccessible concentration of metals collected from nine stations in surface sediment of the Langat River. The concentrations of total and bioaccessible metals from different stations were in the range of 0.49-1.04, 0.10-0.32 μg g-1 for T-Cd, Bio-Cd, respectively, and 12.9-128.03, 2.06-8.53 μg kg-1 for T-Hg, Bio-Hg, respectively. The results revealed highest R-Bio-Cd in Banting station (55.3 %), while the highest R-Bio-Hg was in Kajang station (49.61 %). The chemical speciation of Cd in most sampling stations was in the order of oxidisable-organic > residual > exchangeable > acid-reducible, while speciation of Hg was in the order of exchangeable > residual > oxidisable-organic > acid-reducible. The correlation matric of mean content showed that the TOM, particle size and Mg++ in polluted surface sediments was highly correlated with total mercury. The PCA showed that the main factors influencing the bioaccessibility of Hg in surface sediments were the sediment TOM, F1 (EFLE) and F3 (oxidation-organic), while the factor influencing the bioaccessibility of Cd was the F3 (oxidation-organic) and T-Cd.
The present study applied the use of sequential extraction technique and simple bioaccessibility extraction test to investigate the bioavailable fractions and the human bioaccessible concentration of metals collected from nine stations in surface sediment of the Bernam River. The concentrations of total and bioaccessible metals from different stations were in the range of 0.30-1.43 μg g(-1) and 0.04-0.14 μg g(-1) for total cadmium and bioaccessibility of cadmium, respectively, 6.20-288 μg kg(-1) and 2.06-8.53 μg kg(-1) for total mercury and bioaccessibility of mercury, respectively, and 9.2-106.59 μg g(-1) and 0.4-2.75 μg kg(-1) for total tin and bioaccessibility of tin, respectively. The chemical speciation of Cd in most sampling stations was in the order of oxidisable-organic > acid-reducible > residual > exchangeable, while the chemical speciation of Hg was in the order of exchangeable > residual > oxidisable-organic > acid-reducible and the chemical speciation of Hg was in the order of residual > oxidisable-organic > acid-reducible > exchangeable. The principal component analysis showed that the main factors influencing the bioaccessibility of mercury in surface sediments were the sediment total organic matter, cation exchange capacity, and easily, freely, or leachable and exchangeable fraction, and the factors influencing the bioaccessibility of tin were the total tin and cation exchange capacity, while the bioaccessibility of Cd in surface sediments was influenced by the only factor which is the easily, freely, or leachable and exchangeable fraction.
The Bernam River is one of the most important rivers in Malaysia in that it provides water for industries and agriculture located along its banks. The present study was conducted to assess the level of contamination of heavy metals (Cd, Ni, Cr, Sn, and Fe) in surface sediments in the Bernam River. Nine surface sediment samples were collected from the lower, middle, and upper courses of the river. The results indicated that the concentrations of the metals decreased in the order of Sn > Cr > Ni > Fe > Cd (56.35, 14.90, 5.3, 4.6, and 0.62 μg/g(1) dry weight). Bernam River sediments have moderate to severe enrichment for Sn, moderate for Cd, and no enrichment for Cr, Ni, and Fe. The contamination factor (CF) results demonstrated that Cd and Sn are responsible for the high contamination. The pollution load index (PLI), for all the sampling sites, suggests that the sampling stations were generally unpolluted with the exception of the Bagan Tepi Sungai, Sabak Bernam, and Tanjom Malim stations. Multivariate techniques including Pearson's correlation and hierarchical cluster analysis were used to apportion the various sources of the metals. The results suggested that the sediment samples collected from the upper course of the river had lower metal concentrations, while sediments in the middle and lower courses of the river had higher metal concentrations. Therefore, our results can be useful as a baseline data for government bodies to adopt corrective measure on the issues related to heavy metal pollution in the Bernam River in the future.
The accumulative partitioning of Pb and Cu in the Rhizophora apiculata was studied randomly in the Setiu mangrove forest, Terengganu. Samples of leaves, barks and roots were collected randomly from the selected studied species. Sediments between the roots of the sampled mangrove plants were also collected. The results from analysis for Rhizophora apiculata shows that the concentration of Pb and Cu were accumulated higher in root tissue compared to bark and leaf tissue but lower than surrounding sediment level. The average concentration of Cu for Rhizophora apiculata in leaf, bark, root and sediment was 2.73, 3.94, 5.21 and 9.42 mg I(-1), respectively. Meanwhile, the average concentration of Pb in leaf, bark, root and sediment was 1.43, 1.38, 2.05 and 11.66 mg l(-1), respectively. Results of concentration factors (CF) show that the overall the concentration of Pb and Cu were accumulated much higher in roots system of Rhizophora apiculata.
Ocean sediments give information on the paleoclimatic evolution in the geological past which gives detailed information on both the age of the sediments and both paleoceanographic and paleoclimatic conditions during sedimentation. One possible way to date sediments is with 210Pb method which can be used to date sediments up to 100 years. In this study, two core samples labelled as JB15 and JB17 were collected using pledging corer, analysed and measured for the activity of 209Po and 210Po using the alpha spectrometer. Applying the methods, average sedimentation rates for JB15 and JB17 were calculated as 0.38 cmyr-1 and 0.43 cmyr-1, respectively. Assuming that the sedimentation rate values are accurate, this might imply that the sediments at the depth of 30 cm were deposited 70 years ago.
In this study, the surface sediments of the Malacca and Prai Rivers were analyzed to identify the distributions, and sources of Polycyclic Aromatic Hydrocarbons (PAHs). The total PAH concentrations varied from 716 to 1210 and 1102 to 7938 ng g(-1)dw in the sediments of the Malacca and Prai Rivers, respectively. The PAH concentrations can be classified as moderate and high level of pollution in the sediments of the Malacca and Prai Rivers, respectively. The comparison of PAHs with the Sediment Quality Guidelines (SQGs) indicates that the PAHs in the sediments of the Malacca and Prai Rivers may have the potential to cause adverse toxicity effects on the sampled ecosystems. The diagnostic ratios of individual PAHs indicate both petrogenic- and pyrogenic-origin PAHs with dominance of pyrogenic source in both rivers. These findings demonstrate that the environmental regulations in Malaysia have effectively reduced the input of petrogenic petroleum hydrocarbons into rivers.
In this study, the distributions and sources of sediment-associated polycyclic aromatic hydrocarbons (PAHs) and hopanes in the Malaysian rivers and estuaries were evaluated. The concentrations of 16 USEPA PAHs varied from 225.5 to 293.9 (Perlis River), 195.2 to 481.2 (Kedah River), 791.2 to 1995.4 (Merbok River), 231.2 to 426.7 (Perak River), and 3803.2 to 7442.7 ng g(-1) (Klang River) dry weight. PAHs can be classified as moderate in the Perlis, Kedah, and Perak Rivers, moderate to high in the Merbok River, and high to very high in the Klang River. The comparison of PAHs with sediment quality guidelines (SQGs) indicates that occasionally adverse biological effects may occur from total PAHs, low molecular weight (LMW), and high molecular weight (HMW) PAHs at stations 1, 2, and 3 of the Klang River and from total PAHs at station 2 of the Merbok River. The diagnostic ratios of individual PAHs indicate both petrogenic and pyrogenic origin PAHs with significant dominance of pyrogenic sources in the study areas. The results suggest that Malaysian sediments had hopane ratios (C29/C30) similar to MECO suggesting MECO as a major source of the petroleum hydrocarbons found in the sediments, which is consistent with results reported in previous studies. These findings demonstrate that effective and improved environmental regulations in Malaysia have shifted the source of petroleum hydrocarbons from petrogenic to pyrogenic origin.
This study investigated distributions, composition patterns, sources and potential toxicity of polycyclic aromatic hydrocarbon (PAHs) pollution in surface sediments from the Kim Kim River and Segget River, Peninsular Malaysia. The samples were extracted using Soxhlet extraction, purified using two-step silica gel column chromatography and then analysed by gas chromatography mass spectrometry (GC-MS). The total PAH concentrations ranged from 95.17 to 361.24 ng g-1 dry weight (dw) and 330.09 to 552.76 ng g-1 dw in surface sediments from the Kim Kim and Segget Rivers, respectively. Source type identification using PAH molecular indices and hierarchical cluster analysis (HCA) indicated that PAHs were mostly of pyrogenic origin, while in some stations petrogenic sources had a significant portion. A PAH toxicity assessment using sediment quality guidelines (SQGs), mean effect range-median quotient (M-ERM-Q), benzo[a]pyrene (BaP) equivalent concentration and BaP toxicity equivalent quotient (TEQcarc) indicated low probability of toxicity for both the Kim Kim and Segget Rivers. Moreover, the human health risk assessment applying Cancer Riskingestion and Cancer Riskdermal indicated that probabilistic health risk to humans via ingestion and dermal pathways from sediments of the Kim Kim and Segget Rivers can be categorised as low-to-moderate risk.
This study investigated the impacts of the removal of sand bund on the macrobenthos community structure, seagrass cover, and sediment particle size in Merambong Shoal, Malaysia. The reclamation project deposited sand bund in the middle of Merambong seagrass shoal, resulting in its division into northern (NS) and southern (SS) halves. Ecosystem changes were monitored over a 31-month period using the transect lines method. Bi-monthly samples were collected for assessment. The results revealed a substantial decline in macrobenthos densities compared to previous studies. However, after the removal of the sand bund, there was a significant increase in macrobenthos density, specifically Polychaeta and Malacostraca, at NS. Seagrass cover at NS was initially lower than SS but showed an increase after the complete removal of the sand blockage. Sediment particle analysis reported a higher silt percentage at NS, indicating greater sedimentation at NS, which was partially sheltered from wave actions.
A study was carried out to determine the level of rare earth elements (REEs) in water and sediment samples from ex-mining lakes and River in Kinta Valley, Perak, Malaysia. Surface water and sediments from an ex-mining lake and Kinta River water samples were analyzed for REEs by inductively coupled plasma mass spectrometry. The total concentration of REEs in the ex-mining lake water samples and sediments were found to be 3685 mg/l and 14159 mg/kg, respectively, while the total concentration of REEs in Kinta River water sample was found to be 1224 mg/l. REEs in mining lake water were found to be within 2.42 mg/l (Tb) to 46.50 mg/l (Ce), while for the Kinta River, it was 1.33 mg/l (Ho) to 29.95 mg/l (Ce). Sediment samples were also found with REEs from 9.81 mg/kg (Ho) to 765.84 mg/kg (Ce). Ce showed the highest average concentrations for mining lake (3.88 to 49.08 mg/l) and Kinta River (4.44 to 33.15 mg/l) water samples, while the concentration of La was the highest (11.59 to 771.61 mg/kg) in the mining lake sediment. Lu was shown to have the highest enrichment of REEs in ex-mining lake sediments (107.3). Multivariate statistical analyses such as factor analysis and principal component analysis indicated that REEs were associated and controlled by mixed origin, with similar contributions from anthropogenic and geogenic sources. The speciation study of REEs in ex-tin mining sediments using a modified five-stage sequential extraction procedure indicated that yttrium (Y), gadolinium (Gd), and lanthanum (La) were obtained at higher percentages from the adsorbed/exchanged/carbonate fraction. The average potential mobility of the REEs was arranged in a descending order: Yb > Gd > Y = Dy > Pr > Er > Tm > Eu > Nd > Tb > Sc > Lu > Ce > La, implying that under favorable conditions, these REEs could be released and subsequently pollute the environment.
This study aimed to evaluate the spatial and temporal distribution of heavy metals (Cd, Cr, Cu, Co, Fe, Pb, Ni, V, and Zn) in the sediments of Bayan Lepas Free Industrial Zone of Penang, Malaysia. Ten sampling stations were selected and sediment samples were collected during low tide (2012-2013). Metals were analyzed and the spatial distribution of metals were evaluated based on GIS mapping. According to interim sediment quality guidelines (ISQG), metal contents ranged from below low level to above high level at different stations. Based on the geoaccumulation index (Igeo) of sediment, sampling stations were categorized from unpolluted to strongly polluted. The enrichment factor (EF) of metals in the sediment varied between no enrichment to extremely high enrichment. The potential ecological risk index (RI) indicated Bayan Lepas FIZ was at low risk.
The reconstruction of fire history is essential to understand the palaeoclimate and human history. Polycyclic aromatic hydrocarbons (PAHs) have been extensively used as a fire marker. In this work, the distribution of PAHs in Borneo peat archives was investigated to understand how PAHs reflect the palaeo-fire activity. In total, 52 peat samples were analysed from a Borneo peat core for the PAH analysis. Pyrogenic PAHs consist of 2-7 aromatic rings, some of which have methyl and ethyl groups. The results reveal that the concentration of pyrogenic PAHs fluctuated with the core depth. Compared to low-molecular-weight (LMW) PAHs, the high-molecular-weight (HMW) PAHs had a more similar depth variation to the charcoal abundance. This finding also suggests that the HMW PAHs were mainly formed at a local fire near the study area, while the LMW PAHs could be transported from remote locations.
Bauxite and iron ore mining is the major contributor to metal pollution in Tasik Chini, Malaysia. Deforestation of the protected zone of reserve forest exacerbates the problem. The current study is to understand the speciation of metals spatially in sediment to analyse the risk associated in terms of its mobility and bioavailability. The samples of sediment are collected from Sungai Jemberau, Laut Jemberau, and Laut Gumum of Tasik Chini. Four samplings were conducted for a year, by collecting the surface sediment. Sequential extraction method was followed for speciation of sediment and classified it into exchangeable, reducible, Fe-Mn oxides, organic and residual fractions. The results were also analyzed using principal component analysis (PCA) and cluster analysis (CA). The result reveals that Fe, Al, Mn, Zn, and Pb are the primary constituents of sediment contributing to about 98% of residual fraction. Co, Cd, Cr, As, and Ni are found in trace metal concentration and are identified to be mainly released from anthropogenic sources nearby. Although the individual proportion is less than major metals in exchangeable and carbonate fraction, they possess geochemically significant concentration above the permissible limit. More than 70-80% of all its total concentration proportion is hence found in mobile and bioavailable state. These possess toxic and have chronic effects to aquatic life and public health even in trace elemental concentration. Hence, these metals are the most toxic and bioavailable metals pausing risk for aquatic and public health. PCA analysis highlights that the enrichment of heavy metals in bioavailable fraction is mostly contributed from anthropogenic sources. The same results are emphasized by cluster analysis.
This study investigated physico-chemical interactions among Cu(II), biogenic materials, and Fe2O3 in a continuous-flow biofilm reactor system under a well-controlled environment. The effects of Fe2O3 and bacterial biofilms on the distribution of Cu(II) in a simulated aquatic environment were studied. To control biological and abiotic elements in the marine environment, a biofilm reactor was designed to understand the metal speciation of Cu(II) and its distribution. The reactor consisted of a biofilm chamber equipped with glass slides for biofilms attachment. Due to its ability to grow as biofilm in the medium, Pseudomonas atlantica was cultivated to adsorb trace Cu(II) to attached and suspended cells. It was found that biofilms with 170-285 mequiv chemical oxygen demand (COD) concentration/m2 of total oxidizable materials accelerated the Cu(II) adsorption to the surface of the reactor significantly by a factor of five. A significant inhibition to the bacterial growth took place (p ≤ 0.05; t-test) when Cu(II) concentration was higher than 0.5 mg/L. In the absence of Cu(II), bacterial cells grew normally to 0.075 of optical density (OD). However, at the Cu(II) concentration of 0.2 mg/L, the cells grew to a lower OD of 0.58. The presence of glycine and EDTA substantially reduced the toxicity of Cu(II) on bacterial growth (p ≤ 0.05; paired t-test). Their complexation with Cu(II) rendered the metal ions less available to bacterial cells. This implies that the Fe2O3 and bacterial biofilm affected Cu(II) distribution and speciation in the aquatic environment.
Recent bauxite mining activities in the vicinity of Kuantan, Pahang, have been associated with apparent environmental quality degradation and have raised environmental concerns among the public. This study was carried out to evaluate the overall ecological impacts on water and sediment quality from the bauxite mining activities. Water and sediment samples were collected at seven sampling locations within the bauxite mining areas between June and December 2015. The water samples were analyzed for water quality index (WQI) and distribution of major and trace element geochemistry. Sediment samples were evaluated based on geochemical indices, i.e., the enrichment factor (EF) and geoaccumulation index (I geo). Potential ecological risk index was estimated to assess the degree to which sediments of the mine-impacted areas have been contaminated with heavy metals. The results showed that WQIs of some locations were classified as slightly polluted and contained metal contents exceeding the recommended guideline values. The EFs indicated minimal to moderate enrichment of metals (Pb, Cu, Zn, Mn, As, Cd, Cr, Ni, Co, and Sr) in the sediments. I geo showed slightly to partially polluted sediments with respect to As at some locations. The potential ecological risk index (RI) showed that As posed the highest potential ecological risk with RI of 52.35-60.92 at two locations, while other locations indicated low risk. The findings from this study have demonstrated the impact of recent bauxite mining activities, which might be of importance to the local communities and relevant authorities to initiate immediate rehabilitation phase of the impacted area.
Historical trends of the accumulation of polybrominated diphenyl ethers (PBDEs) and polychlorinated biphenyls (PCBs) in a typical tropical Asian environment were investigated using radio-dated sediment cores from Manila Bay, the Philippines and from the upper Gulf of Thailand. Vertical profiles indicated earlier usage of PCBs than of PBDEs which coincided with their industrial production. The increasing concentrations of total PBDEs and PCBs toward the surface suggested an increased consumption of PBDEs; and possible leakage of PCBs from old machineries into the aquatic environment in recent years. Current input of PCBs to the catchment of Manila Bay was supported by the analyses of air samples and plastic resin pellets. The vertical profiles of total PBDEs in the cores (i.e., rapidly increasing concentrations corresponding to the mid-1980s until mid-1990s, followed by a decrease until the early 2000s, and increasing again toward the surface) likely corresponded to the rapid economic growth in Asia in the 1990s, the Asian financial crisis in 1997, and the economic recovery since early 2000s. BDE-209 was predominant especially on the surface layers. BDEs 47 and 99 generally decreased toward the surface, reflecting the phase-out of the technical penta-PBDE products and the regulation by the Stockholm Convention in recent years. Increasing ratios of BDE-202/209, 206/209, 207/209 and decreasing % of BDE-209 down the core layers may provide evidence for the anaerobic debromination of BDE-209 in the sediment cores. Inventories in ng/cm(2) of total PCBs were higher than total PBDEs (92 vs. 34 and 47 vs. 11 in the Philippines; 47 vs. 33 in Thailand). However, the doubling times indicated faster accumulation of total PBDEs (6-7 years) and BDE-209 (6-7.5 years) than of PCBs (8-11 years). Furthermore, the temporal increase in BDE-209 was comparable to or faster than those reported in other water bodies around the world.