Browse publications by year: 2013

  1. Schaeffner BC, Beveridge I
    Syst Parasitol, 2013 Sep;86(1):1-31.
    PMID: 23949646 DOI: 10.1007/s11230-013-9435-6
    Sampling of a large number of elasmobranchs from coastal waters off Borneo revealed the presence of five new species of Dollfusiella Campbell & Beveridge, 1994 (Trypanorhyncha: Eutetrarhynchidae), namely D. angustiformis n. sp., D. hemispinosa n. sp., D. spinosa n. sp., D. imparispinis n. sp. and D. parva n. sp. Dollfusiella angustiformis n. sp. is described from the spiral intestines of four species of the dasyatid stingray genus Himantura Müller & Henle from both the Indonesian and Malaysian parts of Borneo. All the other species were obtained from Malaysian Borneo. Dollfusiella hemispinosa n. sp. is described from the spiral intestines of three species of Himantura, whereas D. spinosa n. sp. was obtained from several specimens of Pastinachus solocirostris Last, Manjaji & Yearsley (Dasyatidae) as well as from Taeniura lymma 1 (sensu Naylor et al., 2012) (Dasyatidae), Neotrygon kuhlii 2 (sensu Naylor et al., 2012) (Dasyatidae), and Glaucostegus cf. typus (sensu Naylor et al., 2012) (Rhinobatidae). Dollfusiella imparispinis n. sp. is described from the spiral intestine of a single specimen of Chiloscyllium punctatum Müller & Henle (Hemiscyllidae) from the South China Sea off Sarawak, whereas D. parva n. sp. was obtained from several species of Himantura. Specimens of the five novel taxa possess scoleces covered with enlarged microtriches, a morphological characteristic exhibited by several other congeners. However, the new species differ from all congeners by possessing unique patterns of oncotaxy as well as combinations of additional morphological features. The number of valid species within Dollfusiella is increased to 26. For this reason, a key for the species of Dollfusiella is provided. Furthermore, novel information on hosts and geographic distribution is provided for two previously described species of Dollfusiella, D. michiae (Southwell, 1929) and D. spinulifera (Beveridge & Jones, 2000). The latter species differs slightly from the original description and shows a much higher variability with regard to the lengths of the scolex and muscular bulbs and the number of testes. These variable characters subdivided specimens of D. spinulifera into relatively distinct groups. However, the specimens did not differ in their oncotaxy and are considered to represent a single variable species.
    MeSH terms: Animals; Borneo; Cestoda/anatomy & histology; Cestoda/classification*; Cestoda/isolation & purification; Fish Diseases/parasitology*; Intestines/parasitology; Microscopy, Electron, Scanning/veterinary; Elasmobranchii/parasitology*
  2. Zulkifli MH, Teh LK, Lee LS, Zakaria ZA, Salleh MZ
    Genome Announc, 2013;1(4).
    PMID: 23950113 DOI: 10.1128/genomeA.00418-13
    Klebsiella pneumoniae PR04 was isolated from a patient hospitalized in Malaysia. The draft genome sequence of K. pneumoniae PR04 shows differences compared to the reference sequences of K. pneumoniae strains MGH 78578 and NTUH-K2044 in terms of their genomic structures.
    MeSH terms: Base Sequence; Chromosome Mapping; Humans; Klebsiella Infections; Klebsiella pneumoniae; Malaysia; Genomics
  3. Chan XY, Arumugam R, Choo SW, Yin WF, Chan KG
    Genome Announc, 2013;1(4).
    PMID: 23950114 DOI: 10.1128/genomeA.00540-13
    Tropical seawater harbors a rich diversity of microorganisms as a result of its nutrient-rich environment, constant supply of sufficient sunlight, and warm climate. In this report, we present the complexity of the microbial diversity of the surface seawater of the Georgetown coast as determined using next-generation sequencing technology.
    MeSH terms: Climate; Seawater; Sunlight; High-Throughput Nucleotide Sequencing; Transportation Facilities
  4. Choi JY, Ko G, Jheong W, Huys G, Seifert H, Dijkshoorn L, et al.
    Int J Syst Evol Microbiol, 2013 Dec;63(Pt 12):4402-4406.
    PMID: 23950148 DOI: 10.1099/ijs.0.047969-0
    Two Gram-stain-negative, non-fermentative bacterial strains, designated 11-0202(T) and 11-0607, were isolated from soil in South Korea, and four others, LUH 13522, LUH 8638, LUH 10268 and LUH 10288, were isolated from a beet field in Germany, soil in the Netherlands, and sediment of integrated fish farms in Malaysia and Thailand, respectively. Based on 16S rRNA, rpoB and gyrB gene sequences, they are considered to represent a novel species of the genus Acinetobacter. Their 16S rRNA gene sequences showed greatest pairwise similarity to Acinetobacter beijerinckii NIPH 838(T) (97.9-98.4 %). They shared highest rpoB and gyrB gene sequence similarity with Acinetobacter johnsonii DSM 6963(T) and Acinetobacter bouvetii 4B02(T) (85.4-87.6 and 78.1-82.7 %, respectively). Strain 11-0202(T) displayed low DNA-DNA reassociation values (<40 %) with the most closely related species of the genus Acinetobacter. The six strains utilized azelate, 2,3-butanediol, ethanol and dl-lactate as sole carbon sources. Cellular fatty acid analyses showed similarities to profiles of related species of the genus Acinetobacter: summed feature 3 (C16 : 1ω7c, C16 : 1ω6c; 24.3-27.2 %), C18 : 1ω9c (19.9-22.1 %), C16 : 0 (15.2-22.0 %) and C12 : 0 (9.2-14.2 %). On the basis of the current findings, it is concluded that the six strains represent a novel species, for which the name Acinetobacter kookii sp. nov. is proposed. The type strain is 11-0202(T) ( = KCTC 32033(T) = JCM 18512(T)).
    MeSH terms: Acinetobacter/classification*; Acinetobacter/genetics; Acinetobacter/isolation & purification; Base Composition; DNA, Bacterial/genetics; Fatty Acids/chemistry; Genes, Bacterial; Germany; Malaysia; Molecular Sequence Data; Netherlands; Nucleic Acid Hybridization; Phylogeny*; RNA, Ribosomal, 16S/genetics; Soil Microbiology*; Thailand; Bacterial Typing Techniques; Sequence Analysis, DNA; Republic of Korea
  5. Adler PH, Huang YT, Reeves WK, Kim SK, Otsuka Y, Takaoka H
    PLoS One, 2013;8(8):e70765.
    PMID: 23951001 DOI: 10.1371/journal.pone.0070765
    To determine the geographic origin of the black fly Simulium suzukii on Okinawa Island, Japan, macrogenomic profiles derived from its polytene chromosomes were compared with those of mainland and other insular populations of S. suzukii and of the isomorphic Simulium tani species complex. The Okinawan population is a chromosomally unique cytoform, designated 'D,' which is essentially monomorphic and differs by about 27 fixed rearrangements from the chromosomal standard sequence for the subgenus Simulium and by two fixed differences from its nearest known relative, representing the type of S. suzukii, on the main islands of Japan. Chromosomal band sequences revealed two additional, sympatric cytoforms of S. suzukii, designated 'A' and 'B,' each with species status, in Korea, and a third cytoform, designated 'C,' on Hokkaido, Japan. A new cytoform, 'K,' of S. tani from Malaysia, representing the type of S. tani, is more closely related to cytoforms in Thailand, as are populations from Taiwan previously treated as S. suzukii but more closely aligned with S. tani and newly recognized as cytoform 'L' of the latter nominal species. Rooting of chromosomal band sequences by outgroup comparisons allowed directionality of chromosomal rearrangements to be established, enabling phylogenetic inference of cytoforms. Of 41 macrogenomic rearrangements discovered in the five new cytoforms, four provide evidence for a stepwise origin of the Okinawan population from populations characteristic of the main islands of Japan. The macrogenomic approach applied to black flies on Okinawa Island illustrates its potential utility in defining source areas for other species of flies including those that might pose medical and veterinary risks.
    MeSH terms: Animals; Chromosome Banding; Chromosome Mapping; Female; Chromosome Inversion; Japan; Larva/classification*; Larva/genetics; Male; Phylogeny*; Simuliidae/classification*; Simuliidae/genetics; Genetic Variation; Genome, Insect*; Genetic Speciation; Phylogeography; Polytene Chromosomes/chemistry*; Sympatry; Islands
  6. Ismail I, Bulgiba A
    PLoS One, 2013;8(8):e73250.
    PMID: 23951346 DOI: 10.1371/journal.pone.0073250
    BACKGROUND: Mortality among TB/HIV co-infected patients is still high particularly in developing countries. This study aimed to determine the predictors of death in TB/HIV co-infected patients during TB treatment.
    METHODS: We reviewed medical records at the time of TB diagnosis and subsequent follow-up of all newly registered TB patients with HIV co-infection at TB clinics in the Institute of Respiratory Medicine and three public hospitals in the Klang Valley between January 2010 and September 2010. We reviewed these medical records again twelve months after their initial diagnosis to determine treatment outcomes and survival. We analysed using Kaplan-Meier and conducted multivariate Cox proportional hazards analysis to identify predictors of death during TB treatment in TB/HIV co-infected patients.
    RESULTS: Of the 227 patients studied, 53 (23.3%) had died at the end of the study with 40% of deaths within two months of TB diagnosis. Survival at 2, 6 and 12 months after initiating TB treatment were 90.7%, 82.8% and 78.8% respectively. After adjusting for other factors, death in TB/HIV co-infected patients was associated with being Malay (aHR 4.48; 95%CI 1.73-11.64), CD4 T-lymphocytes count < 200 cells/µl (aHR 3.89; 95% CI 1.20-12.63), three or more opportunistic infections (aHR 3.61; 95% CI 1.04-12.55), not receiving antiretroviral therapy (aHR 3.21; 95% CI 1.76-5.85) and increase per 10(3) total white blood cell count per microliter (aHR 1.12; 95% CI 1.05-1.20).
    CONCLUSION: TB/HIV co-infected patients had a high case fatality rate during TB treatment. Initiation of antiretroviral therapy in these patients can improve survival by restoring immune function and preventing opportunistic infections.
    MeSH terms: Adolescent; Adult; Antitubercular Agents/therapeutic use; Female; Hospitals; Humans; Malaysia/epidemiology; Male; Middle Aged; Prognosis; Socioeconomic Factors; Tuberculosis/drug therapy; Tuberculosis/mortality; Tuberculosis/epidemiology*; HIV Infections/epidemiology*; Survival Analysis; Treatment Outcome; Young Adult; Coinfection*
  7. Impoinvil DE, Ooi MH, Diggle PJ, Caminade C, Cardosa MJ, Morse AP, et al.
    PLoS Negl Trop Dis, 2013;7(8):e2334.
    PMID: 23951373 DOI: 10.1371/journal.pntd.0002334
    BACKGROUND: Japanese encephalitis (JE) is the leading cause of viral encephalitis across Asia with approximately 70,000 cases a year and 10,000 to 15,000 deaths. Because JE incidence varies widely over time, partly due to inter-annual climate variability effects on mosquito vector abundance, it becomes more complex to assess the effects of a vaccination programme since more or less climatically favourable years could also contribute to a change in incidence post-vaccination. Therefore, the objective of this study was to quantify vaccination effect on confirmed Japanese encephalitis (JE) cases in Sarawak, Malaysia after controlling for climate variability to better understand temporal dynamics of JE virus transmission and control.

    METHODOLOGY/PRINCIPAL FINDINGS: Monthly data on serologically confirmed JE cases were acquired from Sibu Hospital in Sarawak from 1997 to 2006. JE vaccine coverage (non-vaccine years vs. vaccine years) and meteorological predictor variables, including temperature, rainfall and the Southern Oscillation index (SOI) were tested for their association with JE cases using Poisson time series analysis and controlling for seasonality and long-term trend. Over the 10-years surveillance period, 133 confirmed JE cases were identified. There was an estimated 61% reduction in JE risk after the introduction of vaccination, when no account is taken of the effects of climate. This reduction is only approximately 45% when the effects of inter-annual variability in climate are controlled for in the model. The Poisson model indicated that rainfall (lag 1-month), minimum temperature (lag 6-months) and SOI (lag 6-months) were positively associated with JE cases.

    CONCLUSIONS/SIGNIFICANCE: This study provides the first improved estimate of JE reduction through vaccination by taking account of climate inter-annual variability. Our analysis confirms that vaccination has substantially reduced JE risk in Sarawak but this benefit may be overestimated if climate effects are ignored.

    MeSH terms: Adolescent; Child; Child, Preschool; Climate*; Encephalitis, Japanese/epidemiology*; Encephalitis, Japanese/prevention & control*; Female; Humans; Infant; Malaysia/epidemiology; Male; Rain; Temperature; Vaccination/statistics & numerical data*; Incidence; Japanese Encephalitis Vaccines/administration & dosage*; Japanese Encephalitis Vaccines/immunology*
  8. Karupaiah T, Sundram K
    Nutr J, 2013 Aug 16;12:122.
    PMID: 23953645 DOI: 10.1186/1475-2891-12-122
    BACKGROUND: Postprandial lipemia (PL) contributes to coronary artery disease. The fatty acid composition of dietary fats is potentially a modifiable factor in modulating PL response.

    METHODS: This human postprandial study evaluated 3 edible fat blends with differing polyunsaturated to saturated fatty acids (P/S) ratios (POL = 0.27, AHA = 1.00, PCAN = 1.32). A cross-over design included mildly hypercholestrolemic subjects (9 men and 6 women) preconditioned on test diets fats at 31% energy for 7 days prior to the postprandial challenge on the 8th day with 50 g test fat. Plasma lipids and lipoproteins were monitored at 0, 1.5, 3.5, 5.5 and 7 hr.

    RESULTS: Plasma triacylglycerol (TAG) concentrations in response to POL, AHA or PCAN meals were not significant for time x test meal interactions (P > 0.05) despite an observed trend (POL > AHA > PCAN). TAG area-under-the-curve (AUC) increased by 22.58% after POL and 7.63% after PCAN compared to AHA treatments (P > 0.05). Plasma total cholesterol (TC) response was not significant between meals (P > 0.05). Varying P/S ratios of test meals significantly altered prandial high density lipoprotein-cholesterol (HDL-C) concentrations (P  AHA > PCAN). Paired comparisons was significant between POL vs PCAN (P = 0.009) but not with AHA or between AHA vs PCAN (P > 0.05). A significantly higher HDL-C AUC for POL vs AHA (P = 0.015) and PCAN (P = 0.001) was observed. HDL-C AUC increased for POL by 25.38% and 16.0% compared to PCAN and AHA respectively. Plasma low density lipoprotein-cholesterol (LDL-C) concentrations was significant (P = 0.005) between meals and significantly lowest after POL meal compared to PCAN (P = 0.004) and AHA (P > 0.05) but not between AHA vs PCAN (P > 0.05). AUC for LDL-C was not significant between diets (P > 0.05). Palmitic (C16:0), oleic (C18:1), linoleic (C18:2) and linolenic (C18:3) acids in TAGs and cholesteryl esters were significantly modulated by meal source (P 

    MeSH terms: Adult; Chylomicrons/blood; Diet; Dietary Fats/administration & dosage*; Fatty Acids, Unsaturated/administration & dosage*; Fatty Acids, Unsaturated/blood*; Female; Humans; Hyperlipidemias/drug therapy*; Cholesterol, HDL/blood; Cholesterol, LDL/blood; Male; Triglycerides/blood; Body Mass Index; Cross-Over Studies; Postprandial Period*; Meals
  9. Indirani B, Raman R, Omar SZ
    J Laryngol Otol, 2013 Sep;127(9):876-81.
    PMID: 23954035 DOI: 10.1017/S0022215113001692
    To investigate the aetiology of rhinitis occurring in pregnancy, by (1) describing the relationship between pregnancy rhinitis and serum oestrogen, progesterone, placental growth hormone and insulin-like growth factor, and (2) assessing the prevalence of pregnancy rhinitis among Malaysian women.
    MeSH terms: Adult; Estrogens/blood*; Female; Gestational Age; Humans; Infant, Newborn; Insulin-Like Growth Factor I/analysis*; Insulin-Like Growth Factor I/metabolism; Malaysia/epidemiology; Male; Pregnancy; Pregnancy Complications, Infectious/blood*; Pregnancy Complications, Infectious/etiology; Pregnancy Complications, Infectious/epidemiology*; Progesterone/blood; Prospective Studies; Rhinitis/blood*; Rhinitis/etiology; Rhinitis/epidemiology*; Sex Factors; Nasal Obstruction
  10. Swami V, Neofytou RV, Jablonska J, Thirlwell H, Taylor D, McCreary DR
    Body Image, 2013 Sep;10(4):653-6.
    PMID: 23954197 DOI: 10.1016/j.bodyim.2013.07.007
    The present study tested the hypothesis that men's drive for muscularity would be associated with their valuation of domination, power, status, and aggression over others. A community sample of 359 men from London, UK, completed measures of drive for muscularity, social dominance orientation, right-wing authoritarianism, trait aggression, and need for power, as well as their demographic details. Bivariate correlations showed that greater drive for muscularity was significantly correlated with most of the measures and their subscales. However, in a multiple regression analysis, the only significant predictor of drive for muscularity was support for group-based dominance hierarchies (Adj. R(2)=.17). These results suggest that men's drive for muscularity is associated with a socio-political ideology that favours social dominance.
    MeSH terms: Adolescent; Adult; Aggression/psychology; Authoritarianism; Body Constitution/physiology*; Body Image/psychology*; Drive*; Humans; London; Male; Men/psychology*; Middle Aged; Power (Psychology); Surveys and Questionnaires; Self Concept; Social Dominance*; Muscle, Skeletal; Muscle Strength/physiology*; Young Adult
  11. Ibrahim ZA, Armour CL, Phipps S, Sukkar MB
    Mol Immunol, 2013 Dec;56(4):739-44.
    PMID: 23954397 DOI: 10.1016/j.molimm.2013.07.008
    The innate immune system forms the first line of protection against infectious and non-infectious tissue injury. Cells of the innate immune system detect pathogen-associated molecular patterns or endogenous molecules released as a result of tissue injury or inflammation through various innate immune receptors, collectively termed pattern-recognition receptors. Members of the Toll-like receptor (TLR) family of pattern-recognition receptors have well established roles in the host immune response to infection, while the receptor for advanced glycation end products (RAGE) is a pattern-recognition receptor predominantly involved in the recognition of endogenous molecules released in the context of infection, physiological stress or chronic inflammation. RAGE and TLRs share common ligands and signaling pathways, and accumulating evidence points towards their co-operative interaction in the host immune response. At present however, little is known about the mechanisms that result in TLR versus RAGE signalling or RAGE-TLR cross-talk in response to their shared ligands. Here we review what is known in relation to the physicochemical basis of ligand interactions between TLRs and RAGE, focusing on three shared ligands of these receptors: HMGB1, S100A8/A9 and LPS. Our aim is to discuss what is known about differential ligand interactions with RAGE and TLRs and to highlight important areas for further investigation so that we may better understand the role of these receptors and their relationship in host defense.
    MeSH terms: Advanced Glycosylation End Product-Specific Receptor; Humans; Immunity, Innate/immunology*; Ligands; Lipopolysaccharides/immunology; Lipopolysaccharides/metabolism; Receptors, Immunologic/immunology*; Receptors, Immunologic/metabolism; Signal Transduction/immunology*; Models, Immunological; HMGB1 Protein/immunology; HMGB1 Protein/metabolism; Calgranulin A/immunology; Calgranulin A/metabolism; Calgranulin B/immunology; Calgranulin B/metabolism; Toll-Like Receptors/immunology*; Toll-Like Receptors/metabolism
  12. Tiong SH, Looi CY, Hazni H, Arya A, Paydar M, Wong WF, et al.
    Molecules, 2013 Aug 15;18(8):9770-84.
    PMID: 23955322 DOI: 10.3390/molecules18089770
    Catharanthus roseus (L.) G. Don is a herbal plant traditionally used by local populations in India, South Africa, China and Malaysia to treat diabetes. The present study reports the in vitro antioxidant and antidiabetic activities of the major alkaloids isolated from Catharanthus roseus (L.) G. Don leaves extract. Four alkaloids--vindoline I, vindolidine II, vindolicine III and vindolinine IV--were isolated and identified from the dichloromethane extract (DE) of this plant's leaves. DE and compounds I-III were not cytotoxic towards pancreatic β-TC6 cells at the highest dosage tested (25.0 µg/mL). All four alkaloids induced relatively high glucose uptake in pancreatic β-TC6 or myoblast C2C12 cells, with III showing the highest activity. In addition, compounds II-IV demonstrated good protein tyrosine phosphatase-1B (PTP-1B) inhibition activity, implying their therapeutic potential against type 2 diabetes. III showed the highest antioxidant potential in ORAC and DPPH assays and it also alleviated H₂O₂-induced oxidative damage in β-TC6 cells at 12.5 µg/mL and 25.0 µg/mL.
    MeSH terms: Alkaloids/isolation & purification; Alkaloids/pharmacology; Alkaloids/chemistry*; Antioxidants/pharmacology; Antioxidants/chemistry*; Cell Line; Diabetes Mellitus/drug therapy*; Humans; Hydrogen Peroxide/chemistry; Hypoglycemic Agents/pharmacology; Hypoglycemic Agents/chemistry; Plant Extracts/pharmacology; Plant Extracts/chemistry*; Catharanthus/chemistry
  13. Shahizon AM, Hanafiah M, Hing EY, Julian MR
    BMJ Case Rep, 2013;2013.
    PMID: 23955988 DOI: 10.1136/bcr-2013-200609
    MeSH terms: Adolescent; Equipment Failure; Foreign-Body Migration/etiology*; Humans; Male; Scrotum*; Ventriculoperitoneal Shunt/adverse effects*; Ventriculoperitoneal Shunt/instrumentation*
  14. Mahshim N, Reza F, Omar NS
    J Conserv Dent, 2013 Jul;16(4):331-5.
    PMID: 23956536 DOI: 10.4103/0972-0707.114364
    To evaluate physical properties and cytotoxicity of pure gypsum-based (pure-GYP) and experimental gypsum-based biomaterials mixed with polyacrylic acid (Gyp-PA). The results were compared with calcium hydroxide (CH) and glass ionomer cement (GIC) for application as base/liner materials.
    MeSH terms: Acrylic Resins; Biocompatible Materials; Calcium Hydroxide; Calcium Sulfate; Dental Cavity Lining; Glass Ionomer Cements; Physical Phenomena
  15. Zuryati AG, Qian OQ, Dasmawati M
    J Conserv Dent, 2013 Jul;16(4):356-61.
    PMID: 23956541 DOI: 10.4103/0972-0707.114362
    Home bleaching agents may not be safe for composite resins. The purpose of this study was to evaluate the effects of 10 and 20% Opalescence(®) PF home bleaching agents on the surface roughness and hardness of universal nanocomposite (Filtek Z350), anterior nanocomposite (KeLFiL), and nanohybrid composite (TPH 3).
  16. Kamisah Y, Othman F, Qodriyah HM, Jaarin K
    PMID: 23956777 DOI: 10.1155/2013/709028
    Parkia speciosa Hassk., or stink bean, is a plant indigenous to Southeast Asia. It is consumed either raw or cooked. It has been used in folk medicine to treat diabetes, hypertension, and kidney problems. It contains minerals and vitamins. It displays many beneficial properties. Its extracts from the empty pods and seeds have a high content of total polyphenol, phytosterol, and flavonoids. It demonstrates a good antioxidant activity. Its hypoglycemic effect is reported to be attributable to the presence of β -sitosterol, stigmasterol, and stigmast-4-en-3-one. The cyclic polysulfide compounds exhibit antibacterial activity, while thiazolidine-4-carboxylic acid possesses anticancer property. The pharmacological properties of the plant extract are described in this review. With ongoing research conducted on the plant extracts, Parkia speciosa has a potential to be developed as a phytomedicine.
    MeSH terms: Antioxidants; Flavonoids; Hypoglycemic Agents; Phytosterols; Plant Extracts; Sitosterols; Stigmasterol; Sulfides; Vitamins; Thiazolidines; Polyphenols
  17. Helali AM, Iti FM, Mohamed IN
    Curr Drug Targets, 2013 Dec;14(13):1591-600.
    PMID: 23957815
    Osteoporosis is a pathologic process characterized by low bone mass with skeletal fragility and an increased risk of fracture. It occurs due to an imbalance between bone resorption and formation. Although current antiresorptive therapy halts bone loss, it does not cure the condition as it also inhibits bone formation. Recent preclinical and clinical trials suggest that the inhibition of resorption by cathepsin K inhibitors increases bone formation. Cathepsin K is a papainlike cysteine protease with high potent collagenase activity and predominantly expressed in osteoclasts. While allowing demineralization, cathepsin K inhibitors suppress the degradation of type I collagen (the major organic matrix of bone) and thus enhancing bone formation. Many of these inhibitors have passed preclinical studies and are presently in clinical trials at different stages of advancement. This review explores the promising role of cathepsin K as a novel antiresorptive for the treatment of osteoporosis.
    MeSH terms: Animals; Bone Resorption/drug therapy*; Clinical Trials as Topic; Disease Models, Animal; Female; Humans; Osteoclasts/metabolism; Osteogenesis/drug effects; Bone Density/drug effects; Osteoporosis, Postmenopausal/diagnosis; Osteoporosis, Postmenopausal/drug therapy*; Cysteine Proteinase Inhibitors/pharmacology*; Cysteine Proteinase Inhibitors/therapeutic use*; Collagen Type I/metabolism; Cathepsin K/antagonists & inhibitors*; Cathepsin K/metabolism
  18. Khosravi Y, Rehvathy V, Wee WY, Wang S, Baybayan P, Singh S, et al.
    Gut Pathog, 2013;5:25.
    PMID: 23957912 DOI: 10.1186/1757-4749-5-25
    Helicobacter pylori is a Gram-negative bacterium that persistently infects the human stomach inducing chronic inflammation. The exact mechanisms of pathogenesis are still not completely understood. Although not a natural host for H. pylori, mouse infection models play an important role in establishing the immunology and pathogenicity of H. pylori. In this study, for the first time, the genome sequences of clinical H. pylori strain UM032 and mice-adapted derivatives, 298 and 299, were sequenced using the PacBio Single Molecule, Real-Time (SMRT) technology.
    MeSH terms: Animals; Base Sequence; Gram-Negative Bacteria; Humans; Inflammation; Stomach; Virulence; Helicobacter pylori; Mice
  19. Acharya UR, Sree SV, Muthu Rama Krishnan M, Krishnananda N, Ranjan S, Umesh P, et al.
    Comput Methods Programs Biomed, 2013 Dec;112(3):624-32.
    PMID: 23958645 DOI: 10.1016/j.cmpb.2013.07.012
    Coronary Artery Disease (CAD), caused by the buildup of plaque on the inside of the coronary arteries, has a high mortality rate. To efficiently detect this condition from echocardiography images, with lesser inter-observer variability and visual interpretation errors, computer based data mining techniques may be exploited. We have developed and presented one such technique in this paper for the classification of normal and CAD affected cases. A multitude of grayscale features (fractal dimension, entropies based on the higher order spectra, features based on image texture and local binary patterns, and wavelet based features) were extracted from echocardiography images belonging to a huge database of 400 normal cases and 400 CAD patients. Only the features that had good discriminating capability were selected using t-test. Several combinations of the resultant significant features were used to evaluate many supervised classifiers to find the combination that presents a good accuracy. We observed that the Gaussian Mixture Model (GMM) classifier trained with a feature subset made up of nine significant features presented the highest accuracy, sensitivity, specificity, and positive predictive value of 100%. We have also developed a novel, highly discriminative HeartIndex, which is a single number that is calculated from the combination of the features, in order to objectively classify the images from either of the two classes. Such an index allows for an easier implementation of the technique for automated CAD detection in the computers in hospitals and clinics.
    MeSH terms: Automation*; Coronary Artery Disease/ultrasonography*; Echocardiography*; Heart Ventricles/ultrasonography*; Humans; Fractals
  20. Nursyazana MT, Mohdzain SN, Jeffery J
    Trop Biomed, 2013 Jun;30(2):199-210.
    PMID: 23959485 MyJurnal
    A study to determine the diversity and distribution of ectoparasites and endoparasites infesting wild rat population of Carey Island was carried out from June to December 2010. A total of 81 rats were captured from various locations on Carey Island. Four rat species were identified namely, Rattus tiomanicus (45.7%), Rattus rattus diardii (25.9%), Rattus argentiventer (16%) and Rattus norvegicus (12.3%). Low diversity of ecto and endoparasites were observed infecting the rodent population with 8 ecto and 8 endoparasites species recorded. The ectoparasites recovered fell under 3 broad groups, namely mites (Laelaps nuttali, Laelaps echidninus, Laelaps sculpturatus, Listrophoroides sp. and Ornithonyssus bacoti), lice (Polyplax spinulosa and Hoplopleura pacifica) and tick (Ixodes granulatus) while endoparasites recovered were cestodes (Taenia taeniaformis and Hymenolepis diminuta) and nematodes (Nippostrongylus brasiliensis, Angiostrongylus malaysiensis, Mastophorus muris, Heterakis spumosa, Hepatojarakus malayae and Syphacia muris). The rat population was observed harbouring more than one parasite species. Analysis of data also showed neither intrinsic (host age, host sex) nor extrinsic (season) factors influenced the macroparasites community structure.
    MeSH terms: Animals; Female; Malaysia; Male; Parasites/classification*; Parasites/isolation & purification*; Rodent Diseases/epidemiology*; Rodent Diseases/parasitology*; Biodiversity*; Rats; Coinfection/epidemiology; Coinfection/parasitology; Coinfection/veterinary
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