Browse publications by year: 2018

  1. Pandong J, Gumal M, Alen L, Sidu A, Ng S, Koh LP
    Sci Rep, 2018 10 23;8(1):15672.
    PMID: 30353034 DOI: 10.1038/s41598-018-33872-3
    The integration of Bayesian analysis into existing great ape survey methods could be used to generate precise and reliable population estimates of Bornean orang-utans. We used the Marked Nest Count (MNC) method to count new orang-utan nests at seven previously undocumented study sites in Sarawak, Malaysia. Our survey teams marked new nests on the first survey and revisited the plots on two more occasions; after about 21 and 42 days respectively. We used the N-mixture models to integrate suitability, abundance and detection models which account for zero inflation and imperfect detection for the analysis. The result was a combined estimate of 355 orang-utans with the 95% highest density interval (HDI) of 135 to 602 individuals. We visually inspected the posterior distributions of our parameters and compared precisions between study sites. We subsequently assess the strength or reliability of the generated estimates using identifiability tests. Only three out of the seven estimates had <35% overlap to indicate strong reliability. We discussed the limitations and advantages of our study design, and made recommendations to improve the sampling scheme. Over the course of this research, two of the study sites were gazetted as extensions to the Lanjak-Entimau Wildlife Sanctuary for orang-utan conservation.
    MeSH terms: Animals; Animals, Wild/physiology; Bayes Theorem; Malaysia; Population Density; Ecosystem
  2. Wang FA, Lakshmipriya T, Gopinath SCB
    Nanoscale Res Lett, 2018 Oct 23;13(1):331.
    PMID: 30353254 DOI: 10.1186/s11671-018-2753-5
    Tuberculosis (TB) is a highly contagious life-threatening disease caused by the bacterial pathogen Mycobacterium tuberculosis. ESAT-6, an abundant early secretory antigenic target protein by M. tuberculosis, found to play a vital role in virulence. Developing a friendly method for the detection of ESAT-6 at the lower concentration facilitates to treat TB at an earlier stage and helps to control the spreading of disease. Herein, a new single-step approach was designed and was done by pre-mixing ESAT-6 and antibody before being added to the gold nanoparticle (GNP) followed by the salt-induced aggregation. We could attain the detection limit of 1.25 pM, showing the aggregation of GNP and the red spectral shift. Further, a higher specificity was demonstrated with the lack of electrostatic biofouling by ESAT-6 on GNP and retained the dispersed GNP in the presence of 10-kDa culture filtrate protein from M. tuberculosis. The required precise antibody concentration for this assay was found to be 60 nM. The increment in the antibody concentration from 75 nM drastically diminishes the sensitivity to ~ 680-fold, due to the crowding effect. With this assay, we attested the suitability of colorimetric assay for efficiently detecting the smaller-sized protein.
  3. Law ZK, Al-Shahi Salman R, Bath PM, Steiner T, Sprigg N
    Stroke, 2018 08;49(8):e271-e272.
    PMID: 30355046 DOI: 10.1161/STROKEAHA.118.022071
  4. Leow CH, Fischer K, Leow CY, Braet K, Cheng Q, McCarthy J
    Malar J, 2018 Oct 24;17(1):383.
    PMID: 30355309 DOI: 10.1186/s12936-018-2531-y
    BACKGROUND: Malaria rapid diagnostic tests (RDTs) represent an important antibody based immunoassay platform. Unfortunately, conventional monoclonal antibodies are subject to degradation shortening shelf lives of RDTs. The variable region of the receptor (VNAR) from shark has a potential as alternative to monoclonal antibodies in RDTs due to high thermal stability.

    METHODS: In this study, new binders derived from shark VNAR domains library were investigated. Following immunization of a wobbegong shark (Orectolobus ornatus) with three recombinant malaria biomarker proteins (PfHRP2, PfpLDH and Pvaldolase), a single domain antibody (sdAb) library was constructed from splenocytes. Target-specific VNAR phage were isolated by panning. One specific clone was selected for expression in Escherichia coli expression system, and study of binding reactivity undertaken.

    RESULTS: The primary VNAR domain library possessed a titre of 1.16 × 106 pfu/mL. DNA sequence analysis showed 82.5% of isolated fragments appearing to contain an in-frame sequence. After multiple rounds of biopanning, a highly dominant clone specific to PfHRP2 was identified and selected for protein production in an E. coli expression system. Biological characterization showed the recombinant protein expressed in periplasmic has better detection sensitivity than that of cytoplasmic proteins. Assays of binding activity indicated that its reactivity was inferior to the positive control mAb C1-13.

    CONCLUSIONS: Target-specific bacteriophage VNARs were successfully isolated after a series of immunization, demonstrating that phage display technology is a useful tool for selection of antigen binders. Generation of new binding reagents such as VNAR antibodies that specifically recognize the malaria biomarkers represents an appealing approach to improve the performance of RDTs.

    MeSH terms: Animals; Antibodies, Monoclonal/metabolism; Antibodies, Protozoan/metabolism*; Diagnostic Tests, Routine*; Escherichia coli/metabolism; Malaria/diagnosis*; Recombinant Proteins/metabolism; Biomarkers; Protozoan Proteins/metabolism*; Peptide Library; Mice
  5. Chan LL, Mak JW, Ambu S, Chong PY
    PLoS One, 2018;13(10):e0204732.
    PMID: 30356282 DOI: 10.1371/journal.pone.0204732
    The detection and identification of two endocytobiotic bacterial strains, one affiliated to the "Candidatus Caedibacter acanthamoebae"/"Ca. Paracaedimonas acanthamoeba", and another to the endosymbiont of Acanthamoeba UWC8 and "Ca. Jidaibacter acanthamoeba" are described. For endocytobiont screening, we developed a PCR method with a set of broad-range bacterial 16S rRNA primers to substitute the commonly used but technically demanding fluorescent in situ hybridization technique. Our PCR test alone without sequencing failed to discriminate the endocytobiont-containing and endocytobiont-free Acanthamoeba sp. due to the presence of mismatched primers to host mitochondrial DNA. We highlighted the need to perform bacterial primer checking against the Acanthamoeba genome to avoid false positive detection in PCR. Although the genetic aspect of "Ca. Caedibacter acanthamoebae"/"Ca. Paracaedimonas acanthamoeba" and the endosymbiont of Acanthamoeba UWC8/"Ca. Jidaibacter acanthamoeba" are well studied, knowledge pertaining to their morphologies are quite vague. Hence, we used transmission electron microscopy to examine our endocytobionts which are affiliated to previously described intracellular bacteria of Acanthamoeba sp. We used good-quality TEM images for the localization and the fate of the current endocytobionts inside different life stages of the hosts. Furthermore, to the best of our knowledge, our TEM findings are the first to provide morphological evidence for the clearance of defective Acanthamoeba endocytobionts via an autophagic-like process.
    MeSH terms: Acanthamoeba/genetics*; DNA, Bacterial/genetics; DNA, Mitochondrial/genetics; RNA, Ribosomal, 16S/genetics; Genome, Bacterial/genetics; Alphaproteobacteria/genetics*; Microscopy, Electron, Transmission/methods; Host-Pathogen Interactions/genetics
  6. Jahan N, Abd Manan F, Mansoor A, Zaidi MA, Shahwani MN, Javed MA
    ScientificWorldJournal, 2018;2018:8180174.
    PMID: 30356418 DOI: 10.1155/2018/8180174
    Rice production is decreasing by abiotic stresses like heavy metals. In such circumstances, producing food for growing human population is a challenge for plant breeders. Excess of Al3+ in soil has become threat for high yield of rice. Improvement of crop is one of potential solution for high production. The aim of this study was to develop the new method for optimization of Al3+ toxicity tolerance in indica rice at germination stag using two-way ANOVA and Duncan's multiple-range test (DMRT). Seeds of two indica rice cultivars (Pokkali and Pak Basmati) were exposed in different concentrations (control, 5 mM, 15 mM, and 20 mM) of Al3+ toxicity at pH 4 ±0.2 for two weeks. Germination traits such as final germination percentage (FG%), germination energy (GE), germination speed (GS), germination index (GI), mean time of germination (MGT), germination value (GV), germination velocity (GVe), peak value of germination (GPV), and germination capacity (GC) and growth traits such as root length (RL), shoot length (SL), total dry biomass (TDB), and germination vigour index (GVI) were measured. To obtain the maximum number of significance (≤ 0.01%) parameters in each concentration of Al3+ toxicity with control, two-way ANOVA was established and comparison of mean was done using DMRT. The results showed that 5 mM, 10 mM, and 15 mM have less significant effects on the above-mentioned parameters. However, 20 mM concentration of Al3+ produced significant effects (≤ 0.01%). Therefore, 20 mM of Al3+ is considered optimized limit for indica cultivars (Pokkali and Pak Basmati).
    MeSH terms: Aluminum/toxicity*; Dose-Response Relationship, Drug; Oryza/drug effects*; Oryza/physiology; Stress, Physiological/drug effects*; Stress, Physiological/physiology; Germination/drug effects*; Germination/physiology
  7. Naqvi AA, Hassali MA, Rizvi M, Zehra A, Iffat W, Haseeb A, et al.
    Front Pharmacol, 2018;9:1124.
    PMID: 30356775 DOI: 10.3389/fphar.2018.01124
    Objective: This study aimed to develop and validate a self-reporting adherence tool termed as General Medication Adherence Scale (GMAS) in Urdu language for measuring adherence toward medication use among Pakistani patients with a chronic disease. Methods: A month-long study (December 2017) was conducted in three tertiary health care settings of Karachi, Pakistan. The tool underwent content and face validity as well as factor analyses, i.e., exploratory, partial confirmatory and confirmatory factor analyses. Random sampling was conducted, and sample size was calculated using item response theory. The item-to-respondent ratio was 1:15. Fit indices namely normed fit index (NFI), Tucker Lewis index (TLI), comparative fit index (CFI), goodness of fit index (GFI), absolute goodness of fit (AGFI), parsimony goodness of fit index (PGFI), root mean square error of approximation (RMSEA), and standard root mean square residual (SRMR) were calculated. Additionally, estimation of the convergent, discriminant and known group validities, was conducted. Internal consistency was analyzed by test-retest reliability, McDonald's and Pearson correlation coefficient. The factor analyses were conducted using IBM SPSS version 22 and IBM SPSS AMOS version 25. Results: Content validity index (CVI) was reported at 0.8 (SD 0.147) and the tool was content validated with three hypothetical constructs. Factor analyses highlighted a 3-factor structure. The fit indices were calculated with satisfactory results, i.e., PGFI, GFI, AGFI, NFI, TLI, and CFI were greater than 0.9 and PGFI > 0.5. The values of RMSEA and SRMR were less than 0.07. A Cronbach's alpha value of 0.84 was obtained in reliability analysis. The test-retest Pearson's correlation coefficient value was reported at 0.996 (p-value < 0.01). Convergent and discriminant validities for all constructs and, known group validity for two constructs, were established. A high response rate of 91% was achieved in respondents. Patients without insurance coverage appeared to be low adherent compared to those with insurance coverage (p-value < 0.05). Non-comorbid patients were more likely to be highly adherent as compared to comorbid patients (p-value < 0.01). Conclusion: A novel tool GMAS was developed in Urdu language and was subsequently validated in patients with chronic diseases.
  8. Quartiroli A, Parsons-Smith RL, Fogarty GJ, Kuan G, Terry PC
    Front Psychol, 2018;9:1949.
    PMID: 30356841 DOI: 10.3389/fpsyg.2018.01949
    Mood profiling has a long history in the field of sport and exercise. Several novel mood profile clusters were identified and described in the literature recently (Parsons-Smith et al., 2017). In the present study, we investigated whether the same clusters were evident in an Italian-language, sport and exercise context. The Italian Mood Scale (ITAMS; Quartiroli et al., 2017) was administered to 950 Italian-speaking sport participants (659 females, 284 males, 7 unspecified; age range = 16-63 year, M = 25.03, SD = 7.62) and seeded k-means clustering methodology applied to the responses. Six distinct mood profiles were identified, termed the iceberg, inverse iceberg, inverse Everest, shark fin, surface, and submerged profiles, which closely resembled those reported among English-speaking participants (Parsons-Smith et al., 2017). Significant differences were found in the distribution of specific mood profiles across gender and age groups. Findings supported the cross-cultural generalizability of the six mood profiles and offer new research avenues into their antecedents, correlates and behavioral consequences in Italian-language contexts.
    MeSH terms: Affect; Animals; Cross-Cultural Comparison; Female; Italy; Language; Male; Publications; Research; Sharks; Sports; Ice Cover
  9. Siti Hajar MH, Zulkefli S, Juwita S, Norhayati MN, Siti Suhaila MY, Rasool AHG, et al.
    PeerJ, 2018;6:e5758.
    PMID: 30356972 DOI: 10.7717/peerj.5758
    Background: Secondhand smoke (SHS) exposure has adverse effects on the cardiovascular system. This study aimed to determine the effects of SHS on the cardiovascular disease biomarkers, namely the metabolic, inflammatory, and oxidative stress markers in healthy adult women.

    Methods: This comparative cross-sectional study was conducted among healthy women. The cases included those women exposed to SHS, and the controls included those women not exposed to SHS. SHS exposure was defined as being exposed to SHS for at least 15 min for 2 days per week. Venous blood was taken to measure the metabolic markers (high molecular weight adiponectin, insulin level, insulin resistance, and nonesterified fatty acids), oxidative stress markers (oxidized low density lipoprotein cholesterol and 8-isoprostane), and inflammatory markers (high-sensitivity C-reactive protein and interleukin-6). A hair nicotine analysis was also performed. An analysis of covariance and a simple linear regression analysis were conducted.

    Results: There were 101 women in the SHS exposure group and 91 women in the non-SHS exposure group. The mean (with standard deviation) of the hair nicotine levels was significantly higher in the SHS exposure group when compared to the non-SHS exposure group [0.22 (0.62) vs. 0.04 (0.11) ng/mg; P = 0.009]. No significant differences were observed in the high molecular weight adiponectin, insulin and insulin resistance, nonesterified fatty acids, 8-isoprostane, oxidized low density lipoprotein cholesterol, interleukin-6, and high-sensitivity C-reactive protein between the two groups. The serum high molecular weight adiponectin was negatively associated with the insulin level and insulin resistance in the women exposed to SHS. However, no significant relationships were seen between the high molecular weight adiponectin and nonesterified fatty acids, 8-isoprostane, oxidized low density lipoprotein cholesterol, high-sensitivity C-reactive protein in the SHS group.

    Discussion: There were no significant differences in the metabolic, oxidative stress, and inflammatory markers between the SHS exposure and non-SHS exposure healthy women. A low serum level of high molecular weight adiponectin was associated with an increased insulin level and resistance in the women exposed to SHS.

    MeSH terms: Adult; C-Reactive Protein; Cardiovascular Diseases; Cardiovascular System; Cross-Sectional Studies; Fatty Acids, Nonesterified; Female; Hair; Humans; Insulin; Insulin Resistance; Cholesterol, LDL; Molecular Weight; Nicotine; Tobacco Smoke Pollution; Dinoprost; Biomarkers; Interleukin-6; Linear Models; Oxidative Stress; Adiponectin
  10. Ramasamy TS, Ong ALC, Cui W
    Adv Exp Med Biol, 2018 10 26;1077:41-66.
    PMID: 30357683 DOI: 10.1007/978-981-13-0947-2_4
    Generation of functional hepatocytes from human pluripotent stem cells (hPSCs) is a vital tool to produce large amounts of human hepatocytes, which hold a great promise for biomedical and regenerative medicine applications. Despite a tremendous progress in developing the differentiation protocols recapitulating the developmental signalling and stages, these resulting hepatocytes from hPSCs yet achieve maturation and functionality comparable to those primary hepatocytes. The absence of 3D milieu in the culture and differentiation of these hepatocytes may account for this, at least partly, thus developing an optimal 3D culture could be a step forward to achieve this aim. Hence, review focuses on current development of 3D culture systems for hepatic differentiation and maturation and the future perspectives of its application.
    MeSH terms: Cell Differentiation*; Humans; Liver; Cell Culture Techniques/trends*; Hepatocytes/cytology*; Pluripotent Stem Cells/cytology*
  11. Chowdhury SR, Mh Busra MF, Lokanathan Y, Ng MH, Law JX, Cletus UC, et al.
    Adv Exp Med Biol, 2018 10 26;1077:389-414.
    PMID: 30357700 DOI: 10.1007/978-981-13-0947-2_21
    Collagen type I is the most abundant matrix protein in the human body and is highly demanded in tissue engineering, regenerative medicine, and pharmaceutical applications. To meet the uprising demand in biomedical applications, collagen type I has been isolated from mammalians (bovine, porcine, goat and rat) and non-mammalians (fish, amphibian, and sea plant) source using various extraction techniques. Recent advancement enables fabrication of collagen scaffolds in multiple forms such as film, sponge, and hydrogel, with or without other biomaterials. The scaffolds are extensively used to develop tissue substitutes in regenerating or repairing diseased or damaged tissues. The 3D scaffolds are also used to develop in vitro model and as a vehicle for delivering drugs or active compounds.
    MeSH terms: Amphibians; Animals; Biocompatible Materials*; Cattle; Collagen; Goats; Humans; Swine; Tissue Engineering; Collagen Type I*; Rats; Tissue Scaffolds*
  12. Memon MA, Yunus RM, Memon B, Awaiz A, Khan S
    Surg Laparosc Endosc Percutan Tech, 2018 Dec;28(6):337-348.
    PMID: 30358650 DOI: 10.1097/SLE.0000000000000589
    AIMS AND OBJECTIVES: The aim was to conduct a systematic review and meta-analysis of the randomized evidence to determine the relative merits of perioperative outcomes of laparoscopic-assisted (LARR) versus open rectal resection (ORR) for proven rectal cancer.

    MATERIALS AND METHODS: A search of the Medline, Embase, Science Citation Index, Current Contents and PubMed databases identified English-language randomized clinical trials comparing LARR and ORR. The meta-analysis was prepared in accordance with the PRISMA statement. Thirteen outcome variables were analyzed. Random effects meta-analyses were performed due to heterogeneity.

    RESULTS: A total of 14 randomized clinical trials that included 3843 rectal resections (LARR 2096, ORR 1747) were analyzed. The summary point estimates favored LARR for the intraoperative blood loss, commencement of oral intake, first bowel movement, and length of hospital stay. There was significantly longer duration of operating time of 38.29 minutes for the LARR group. Other outcome variables such as total complications, postoperative pain, postoperative ileus, abdominal abscesses, postoperative anastomotic leak, reintervention and postoperative mortality rates were found to have comparable outcomes for both cohorts.

    CONCLUSIONS: LARR was associated with significantly reduced blood loss, quicker resumption of oral intake, earlier return of gastrointestinal function, and shorter length of hospital stay at the expense of significantly longer operating time. Postoperative morbidity and mortality and analgesia requirement for both these groups were comparable. LARR seems to be a safe and effective alternative to ORR; however, it needs to be performed in established colorectal units with experienced laparoscopic surgeons.

    MeSH terms: Humans; Length of Stay/statistics & numerical data; Pain, Postoperative/etiology; Laparoscopy*; Postoperative Complications/etiology; Rectal Neoplasms/surgery*; Rectum/surgery*; Reoperation/statistics & numerical data; Randomized Controlled Trials as Topic; Blood Loss, Surgical/statistics & numerical data; Treatment Outcome; Recovery of Function; Operative Time
  13. Hii SYF, Ahmad N, Hashim R, Liow YL, Abd Wahab MA, Mohd Khalid MKN
    BMC Res Notes, 2018 Oct 25;11(1):760.
    PMID: 30359301 DOI: 10.1186/s13104-018-3868-6
    OBJECTIVE: There is a lack of study in Corynebacterium diphtheriae isolates in Malaysia. The alarming surge of cases in year 2016 lead us to evaluate the local clinical C. diphtheriae strains in Malaysia. We conducted single nucleotide polymorphism phylogenetic analysis on the core and pan-genome as well as toxin and diphtheria toxin repressor (DtxR) genes of Malaysian C. diphtheriae isolates from the year 1986-2016.

    RESULTS: The comparison between core and pan-genomic comparison showed variation in the distribution of C. diphtheriae. The local isolates portrayed a heterogenous trait and a close relationship between Malaysia's and Belarus's, Africa's and India's strains were observed. A toxigenic C. diphtheriae clone was noted to be circulating in the Malaysian population for nearly 30 years and from our study, the non-toxigenic and toxigenic C. diphtheriae strains can be differentiated significantly into two large clusters, A and B respectively. Analysis against vaccine strain, PW8 portrayed that the amino acid composition of toxin and DtxR in Malaysia's local strains are well-conserved and there was no functional defect noted. Hence, the change in efficacy of the currently used toxoid vaccine is unlikely to occur.

  14. Ramli MI, Sulong AB, Muhamad N, Muchtar A, Arifin A, Mohd Foudzi F, et al.
    PLoS One, 2018;13(10):e0206247.
    PMID: 30359433 DOI: 10.1371/journal.pone.0206247
    The combination of metallic bio-inert material, stainless-steel 316L (SS316L) and a bio-active material, hydroxyapatite (HA) can produce a composite which has superior properties for orthopaedic applications. The main objective of this study is to investigate the effects of sintering temperature and holding time on the physical and mechanical properties of the sintered part. 50wt.% SS316L and 50wt.% HA were mixed with a binder system of palm stearin (PS) and polyethylene (PE) at 61 vol.% powder loading. Rheological properties show a pseudo-plastic behaviour of the feedstock, where viscosity decreases with increasing shear rate. The feedstock was injection moulded into a tensile bar shape while thermal debinding was carried out at 320°C and 500°C. The brown parts were sintered at 1000, 1100, 1200 and 1300°C, with three different sintering times of 1, 3 and 5 hours in the furnace. It was found that the highest sintered density measured was 95.61% of the theoretical density. In addition, the highest hardness and Young's modulus measured were 150.45 HV and 52.61 GPa respectively, which are higher than those of human bone. The lowest percentage of carbon content was 0.022wt.% given by the sample sintered at 1300°C for 1 hour. Therefore, SS316L/HA composite with good mechanical and physical properties was successfully produced through the PIM process.
    MeSH terms: Electroplating/methods; Hardness; Humans; Injections; Materials Testing*; Metallurgy/methods; Powders/chemistry; Stainless Steel/chemistry*; Surface Properties; Temperature; Durapatite/chemistry*; Coated Materials, Biocompatible/chemical synthesis*; Coated Materials, Biocompatible/chemistry*; Elastic Modulus; Physical Phenomena; Mechanical Phenomena
  15. Gao X, Guo L, Li J, Thu HE, Hussain Z
    J Control Release, 2018 12 28;292:29-57.
    PMID: 30359665 DOI: 10.1016/j.jconrel.2018.10.024
    Lung cancer (LC) is the second most prevalent type of cancer and primary cause of mortality among both men and women, worldwide. The most commonly employed diagnostic modalities for LC include chest X-ray (CXR), magnetic-resonance-imaging (MRI), computed tomography (CT-scan), and fused-positron-emitting-tomography-CT (PET-CT). Owing to several limitations associated with the use of conventional diagnostic tools such as radiation burden to the patient, misleading diagnosis ("missed lung cancer"), false staging and low sensitivity and resolution, contemporary diagnostic regimen needed to be employed for screening of LC. In recent decades, nanotechnology-guided interventions have been transpired as emerging nanoimaging probes for detection of LC at advanced stages, while producing signal amplification, better resolution for surface and deep tissue imaging, and enhanced translocation and biodistribution of imaging probes within the cancerous tissues. Besides enormous potential of nanoimaging probes, nanotechnology-based advancements have also been evidenced for superior efficacy for treatment of LC and abolishing pulmonary metastasis (PM). The success of nanotherapeutics is due to their ability to maximise translocation and biodistribution of anti-neoplastic agents into the tumor tissues, improve pharmacokinetic profiles of anti-metastatic agents, optimise target-specific drug delivery, and control release kinetics of encapsulated moieties in target tissues. This review aims to overview and critically discuss the superiority of nanoimaging probes and nanotherapeutics over conventional regimen for early detection of LC and abolishing PM. Current challenges to clinical transition of nanoimaging probes and therapeutic viability of nanotherapeutics for treatment for LC and PM have also been pondered.
    MeSH terms: Electrons; Female; Humans; Kinetics; Lung Neoplasms; Magnetic Resonance Imaging; Male; Tissue Distribution; Tomography, X-Ray Computed; X-Rays; Nanotechnology; Positron-Emission Tomography; Early Detection of Cancer; Positron Emission Tomography Computed Tomography
  16. Subudhi A, Acharya UR, Dash M, Jena S, Sabut S
    Comput Biol Med, 2018 12 01;103:116-129.
    PMID: 30359807 DOI: 10.1016/j.compbiomed.2018.10.016
    It is difficult to develop an accurate algorithm to detect the stroke lesions using magnetic resonance imaging (MRI) images due to variation in different lesion sizes, variation in morphological structure, and similarity in intensity of lesion with normal brain in three types of stroke, namely partial anterior circulation syndrome (PACS), lacunar syndrome (LACS) and total anterior circulation stroke (TACS). In this paper, we have integrated the advantages of Delaunay triangulation (DT) and fractional order Darwinian particle swarm optimization (FODPSO), called DT-FODPSO technique for automatic segmentation of the structure of the stroke lesion. The approach was validated on 192 MRI images obtained from different stroke subjects. Statistical and morphological features were extracted and classified according to the Oxfordshire community stroke project (OCSP) using support vector machine (SVM) and random forest (RF) classifiers. The method effectively detected the stroke lesions and achieved promising results with an average sensitivity of 0.93, accuracy of 0.95, JI of 0.89 and Dice similarity index of 0.93 using RF classifier. These promising results indicates the DT based optimized approach is efficient in detecting ischemic stroke and it can aid the neuro-radiologists to validate their routine screening.
    MeSH terms: Algorithms; Humans; Image Interpretation, Computer-Assisted/methods*; Magnetic Resonance Imaging/methods*
  17. Noor-Shazleen-Husnie, M.M., Emelia, O., Ahmad-Firdaus, M.S., Aishah-Hani, A., Zainol-Ariffin, P.
    Trop Biomed, 2018;35(2):330-346.
    MyJurnal
    Wolbachia, a naturally endosymbiotic bacteria, has shown its potential as one of
    biological control agents for vector borne diseases. Due to large number of mosquitoes
    involved in Wolbachia screening, Loop-mediated isothermal amplification (LAMP) is
    recommended as a convenient and time-saving technique. This study aimed to evaluate a
    newly developed LAMP assay for detection of Wolbachia by targeting 16S rDNA gene in
    samples of wild mosquito populations. The LAMP products were confirmed by colorimetric
    detection using hydroxy naphthol blue (HNB), digestion with RsaI restriction enzyme and gel
    electrophoresis. The restriction enzyme digestion of PCR products was performed to
    differentiate between Wolbachia supergroups A and B. Out of 765 mosquito samples tested,
    349 (45.6%) and 237 (31%) of the samples were positive for LAMP and PCR techniques
    respectively. The prevalence of Wolbachia detected in mosquitoes was significantly higher
    using LAMP as compared to PCR. There is significant association between numbers of
    mosquitoes positive with Wolbachia detected using LAMP and PCR (χ2=61.31; df=1; p < 0.05)
    with a kappa (κ) value of 0.27 and Phi value, 0.283. This study highlighted the potential of
    LAMP as a sensitive, specific and rapid tool for screening of Wolbachia in mosquitoes, thus it
    presents as an alternative to PCR-based assays.
    MeSH terms: Animals; Colorimetry; DNA Restriction Enzymes; DNA, Ribosomal; Electrophoresis; Culicidae; Naphthalenesulfonates; Prevalence; Polymerase Chain Reaction; Wolbachia; Nucleic Acid Amplification Techniques; Biological Control Agents; Mosquito Vectors
  18. Rahim, J., Maimusa, A.H., Irfan Shah, Ahmad, A.H.
    Trop Biomed, 2018;35(2):308-320.
    MyJurnal
    Reduction of dengue cases and forecast its risk, and identification of vectors
    breeding habitats and their abundance is the prime target in any dengue control programme.
    In this aspect, larval surveys were conducted in four localities in Penang Island between
    September 2015 to September 2016. The abundance of Aedes mosquitoes and their breeding
    habitat both indoor and outdoor were recorded. Aedes indices i.e. Container index (CI), House
    index (HI) and Breteau Index (BI) were calculated for dengue risk, besides the attraction and
    repulsion (RF) of 5 container type evaluation. Among a total of 2,415 potential habitats
    examined, 638 were found positive for immature stages of Aedes. A total of 23,319 immatures
    were collected from the selected areas. Aedes albopictus (93.7%) was the dominant species
    followed by Aedes aegypti (5.8%) and others (0.5%). Among the 5 container types, plastic type
    containers were the most productive (45.5%) whereas the natural containers (6.1%) were the
    least (P < 0.05). High values of Aedes indices showed that all selected localities are at risk of
    dengue due to high prevalence of Ae. albopictus. Rubber and natural type of containers were
    the most attractive breeding habitats for vectors of dengue. The results of this study provides
    an insight to the current distribution of dengue vectors, which may be crucial to the health
    authorities in vector management programmes in the future.
    MeSH terms: Aedes; Animals; Breeding; Dengue; Disease Vectors; Larva; Plastics; Surveys and Questionnaires; Rubber; Prevalence; Ecosystem; Islands
  19. Said, H.M., Mohamed, N.A., Hussin, H., Abdul Rahman, N., Hashim, R.
    Trop Biomed, 2018;35(2):300-307.
    MyJurnal
    Since its first discovery in 1996, Carbapenem-resistant Enterobactericeae
    (CRE) has been increasingly reported as a cause of infections particularly in immunocompromised
    patients. With limited treatment options, these multidrug-resistant organisms
    are associated with high mortality rates and are now recognized as an important cause
    of health-care associated infections. This study aimed to determine the prevalence of
    CRE at a 500-bedded tertiary hospital in Selangor, Malaysia. This study identified and
    analyzed CRE culture results from January 2015 to December 2016. The isolates were
    identified by conventional and Vitek 2® methods. Susceptibility tests were done by disk
    diffusion technique and confirmed by E-test. Polymerase chain reaction was performed
    to identify NDM-1, KPC, OXA-48, VIM and IMP genes. Demographic data and clinical
    characteristics were collected from the Hospital Information System. The prevalence of
    CRE in 2015 and 2016 was 0.3% (5/1590) and 1.2% (17/1402) respectively. 65% of the
    patients had underlying haematological disorders. Majority (81.8%) of the isolates were
    Klebsiella pneumoniae, followed by Serratia marcescens, Escherichia coli, and
    Citrobacter koseri. Klebsiella pneumoniae that co-produced NDM-1 and OXA48 genes
    were the most common encounter (41%), followed by OXA-48 (35%), NDM-1 (12%) and
    KPC (6%). All isolates were resistant to all generations of cephalosporin and carbapenem.
    The rate of resistance to tigecycline, polymyxin B and colistin were quite high; 46% (5
    from 12 isolates), 17% (2/12) and 17% (3/17) respectively. The prevalence of CRE in this
    institution was relatively low. However, there is a high prevalence of OXA-48 and NDM
    co-producer amongst CRE isolates. Physicians should have high index of CRE suspicion
    in hematological patients.
    MeSH terms: beta-Lactamases; Colistin; Escherichia coli; Humans; Inosine Monophosphate; Klebsiella pneumoniae; Malaysia; Polymyxin B; Serratia marcescens; Carbapenems; Prevalence; Drug Resistance, Multiple, Bacterial; Citrobacter koseri; Tertiary Care Centers
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